Evidence map›Paper›PMID 28147344›Full record

ArticleOncotarget2017

Detection and localization of viral infection in the pancreas of patients with type 1 diabetes using short fluorescently-labelled oligonucleotide probes.

Niels Busse, Federico Paroni, Sarah J Richardson, Jutta E Laiho, Maarit Oikarinen, Gun Frisk, Heikki Hyöty, Eelco de Koning, Noel G Morgan, Kathrin Maedler

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Association BetweenFrontiers in endocrinology · 2021
    Pooled it
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  5. Review
  6. Article
  7. Review
  8. Article
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  10. Article
  11. Identifying the 'Achilles heel' of type 1 diabetes.Clinical and experimental immunology · 2021
    Review
  12. Inflammasomes and Type 1 Diabetes.Frontiers in immunology · 2021
    Review
  13. Article
  14. Review
  15. Review
  16. Article
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  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 5 countries.

Niels BusseIslet Biology Laboratory, University of Bremen, Germany.
Federico ParoniIslet Biology Laboratory, University of Bremen, Germany.
Sarah J RichardsonIslet Biology Exeter, University of Exeter Medical School, UK.
Jutta E LaihoDepartment of Virology, School of Medicine, University of Tampere, Tampere, Finland.
Maarit OikarinenDepartment of Virology, School of Medicine, University of Tampere, Tampere, Finland.
Gun FriskDepartment of Immunology, Genetics and Pathology, Uppsala University, Sweden.
Heikki HyötyDepartment of Virology, School of Medicine, University of Tampere, Tampere, Finland.
Eelco de KoningDepartment of Internal Medicine, Leiden University Medical Center, Leiden, The Netherlands.
Noel G MorganIslet Biology Exeter, University of Exeter Medical School, UK.
Kathrin MaedlerIslet Biology Laboratory, University of Bremen, Germany.
University of Bremen · DETampere University · FIUniversity of Exeter · GBHubrecht Institute for Developmental Biology and Stem Cell Research · NLTampere University · FIUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enteroviruses, specifically of the Coxsackie B virus family, have been implicated in triggering islet autoimmunity and type 1 diabetes, but their presence in pancreata of patients with diabetes has not been fully confirmed.To detect the presence of very low copies of the virus genome in tissue samples from T1D patients, we designed a panel of fluorescently labeled oligonucleotide probes, each of 17-22 nucleotides in length with a unique sequence to specifically bind to the enteroviral genome of the picornaviridae family.With these probes enteroviral RNA was detected with high sensitivity and specificity in infected cells and tissues, including in FFPE pancreas sections from patients with T1D. Detection was not impeded by variations in sample processing and storage thereby overcoming the potential limitations of fragmented RNA. Co-staining of small RNA probes in parallel with classical immunstaining enabled virus detection in a cell-specific manner and more sensitively than by viral protein.

Indexed as

Oligonucleotide ProbesDiabetes Mellitus, Type 1EnterovirusEnterovirus InfectionsFluorescent DyesHumansImmunohistochemistryIn Situ Hybridization, FluorescencePancreasPolymerase Chain ReactionRNA, ViralSensitivity and SpecificityFluorescent DyesOligonucleotide ProbesRNA, Viralenterovirusesisletsoligonucleotide probespancreasPathology Sectiontype 1 diabetes

Identifiers

PMID28147344
PMCPMC5355040
OpenAlexW2585062748

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.