Evidence map›Paper›PMID 28145886›Full record

ArticleOncotarget2017

Identification of novel follicular dendritic cell sarcoma markers, FDCSP and SRGN, by whole transcriptome sequencing.

Luisa Lorenzi, Claudia Döring, Tobias Rausch, Vladimir Benes, Silvia Lonardi, Mattia Bugatti, Elias Campo, José Cabeçadas, Ingrid Simonitsch-Klupp, Anita Borges and 6 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  7. Article
  8. Article
  9. Review
  10. Laryngeal EBV-positive Inflammatory Follicular Dendritic cell/fibroblastic Reticular cell Tumour.Indian journal of otolaryngology and head and neck surgery : official publication of the Association of Otolaryngologists of India · 2023
    Article
  11. Article
  12. Article
  13. Review
  14. A human cell atlas of fetal gene expression.Science (New York, N.Y.) · 2020
    Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 5 countries.

Luisa LorenziPathology Unit, Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.
Claudia DöringDr. Senckenberg Institute of Pathology, Goethe University, Frankfurt am Main, Germany.
Tobias RauschGenecore, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
Vladimir BenesGenecore, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
Silvia LonardiPathology Unit, Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.
Mattia BugattiPathology Unit, Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.
Elias CampoHaematopathology Section, Hospital Clinic, IDIBAPS, University of Barcelona, Barcelona, Spain.
José CabeçadasDepartment of Pathology, Portuguese Institute of Oncology, Lisbon, Portugal.
Ingrid Simonitsch-KluppInstitute of Pathology, Medical University of Vienna, Vienna, Austria.
Anita BorgesHistopathology, SRL Diagnostics, Mumbai, India.
Jay MehtaHistopathology, SRL Diagnostics, Mumbai, India.
Claudio AgostinelliDepartment of Experimental, Diagnostic and Specialty Medicine, Haematopathology Section, S. Orsola-Malpighi Hospital, University of Bologna, Bologna, Italy.
Stefano Aldo PileriDepartment of Experimental, Diagnostic and Specialty Medicine, Haematopathology Section, S. Orsola-Malpighi Hospital, University of Bologna, Bologna, Italy.
Fabio FacchettiPathology Unit, Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.
Martin-Leo HansmannDr. Senckenberg Institute of Pathology, Goethe University, Frankfurt am Main, Germany.
Sylvia HartmannDr. Senckenberg Institute of Pathology, Goethe University, Frankfurt am Main, Germany.
University of Brescia · ITGoethe University Frankfurt · DEEuropean Molecular Biology Laboratory · DEInstituto Português de Oncologia Francisco Gentil · PTMedical University of Vienna · ATPoliclinico S.Orsola-Malpighi · ITUniversitat de Barcelona · ESUniversity of Bologna · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Follicular dendritic cell (FDC)-sarcoma is a rare neoplasm with morphologic and phenotypic features of FDCs. It shows an extremely heterogeneous morphology, therefore, its diagnosis relys on the phenotype of tumor cells. Aim of the present study was the identification of new specific markers for FDC-sarcoma by whole transcriptome sequencing (WTS). Candidate markers were selected based on gene expression level and biological function. Immunohistochemistry was performed on reactive tonsils, on 22 cases of FDC-sarcomas and 214 control cases including 114 carcinomas, 87 soft tissue tumors, 5 melanomas, 5 thymomas and 3 interdigitating dendritic cell sarcomas. FDC secreted protein (FDCSP) and Serglycin (SRGN) proved to be specific markers of FDC and related tumor. They showed better specificity and sensitivity values than some well known markers used in FDC sarcoma diagnosis (specificity: 98.6%, and 100%, respectively; sensitivity: 72.73% and 68.18%, respectively). In our cohorts CXCL13, CD21, CD35, FDCSP and SRGN were the best markers for FDC-sarcoma diagnosis and could discriminate 21/22 FDC sarcomas from other mesenchymal tumors by linear discriminant analysis. In summary, by WTS we identified two novel FDC markers and by the analysis of a wide cohort of cases and controls we propose an efficient marker panel for the diagnosis of this rare and enigmatic tumor.

Indexed as

AgedBiomarkers, TumorDendritic Cell Sarcoma, FollicularFemaleHumansImmunohistochemistryMaleProteinsProteoglycansTissue Array AnalysisTranscriptomeVesicular Transport ProteinsBiomarkers, TumorFDCSP protein, humanProteinsProteoglycansserglycinVesicular Transport Proteinsfollicular dendritic cell sarcomafollicular dendritic cell-secreted proteinimmunohistochemistryserglycinwhole transcriptome sequencing

Identifiers

PMID28145886
PMCPMC5369977
OpenAlexW2580150949

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.