Evidence map›Paper›PMID 28143937›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Screen for reactivation of MeCP2 on the inactive X chromosome identifies the BMP/TGF-β superfamily as a regulator of XIST expression.

Smitha Sripathy, Vid Leko, Robin L Adrianse, Taylor Loe, Eric J Foss, Emily Dalrymple, Uyen Lao, Tonibelle Gatbonton-Schwager, Kelly T Carter, Bernhard Payer and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 69 citations in OpenAlex.

  1. Antisense Oligonucleotide-MediatedAnimals : an open access journal from MDPI · 2026
    Article
  2. Review
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  4. Editing DNA methylation in vivo.Nature communications · 2025
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. State-of-the-art therapies for Rett syndrome.Developmental medicine and child neurology · 2023
    Review
  13. Multiplex epigenome editing ofScience translational medicine · 2023
    Article
  14. Long noncoding RNAGenes & diseases · 2022
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Smitha SripathyClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Vid LekoClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Robin L AdrianseClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Taylor LoeClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Eric J FossClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Emily DalrympleClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Uyen LaoClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Tonibelle Gatbonton-SchwagerClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Kelly T CarterClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Bernhard PayerHoward Hughes Medical Institute, Massachusetts General Hospital, Boston, MA 02114.
Patrick J PaddisonHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
William M GradyClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Jeannie T LeeHoward Hughes Medical Institute, Massachusetts General Hospital, Boston, MA 02114; lee@molbio.mgh.harvard.edu abedalov@fhcrc.org.
Marisa S BartolomeiEpigenetics Program, Department of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104.
Antonio BedalovClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109; lee@molbio.mgh.harvard.edu abedalov@fhcrc.org.
Fred Hutch Cancer Center · USHarvard University · USMassachusetts General Hospital · USUniversity of Pennsylvania · USUniversity of Washington · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rett syndrome (RS) is a debilitating neurological disorder affecting mostly girls with heterozygous mutations in the gene encoding the methyl-CpG-binding protein MeCP2 on the X chromosome. Because restoration of MeCP2 expression in a mouse model reverses neurologic deficits in adult animals, reactivation of the wild-type copy of MeCP2 on the inactive X chromosome (Xi) presents a therapeutic opportunity in RS. To identify genes involved in MeCP2 silencing, we screened a library of 60,000 shRNAs using a cell line with a MeCP2 reporter on the Xi and found 30 genes clustered in seven functional groups. More than half encoded proteins with known enzymatic activity, and six were members of the bone morphogenetic protein (BMP)/TGF-β pathway. shRNAs directed against each of these six genes down-regulated X-inactive specific transcript (XIST), a key player in X-chromosome inactivation that encodes an RNA that coats the silent X chromosome, and modulation of regulators of this pathway both in cell culture and in mice demonstrated robust regulation of XIST. Moreover, we show that Rnf12, an X-encoded ubiquitin ligase important for initiation of X-chromosome inactivation and XIST transcription in ES cells, also plays a role in maintenance of the inactive state through regulation of BMP/TGF-β signaling. Our results identify pharmacologically suitable targets for reactivation of MeCP2 on the Xi and a genetic circuitry that maintains XIST expression and X-chromosome inactivation in differentiated cells.

Indexed as

X Chromosome InactivationAnimalsBone Morphogenetic Protein 2Cell LineFemaleGene Expression ProfilingGene LibraryHumansMethyl-CpG-Binding Protein 2MiceRett SyndromeRNA, Long NoncodingRNA, Small InterferingSignal TransductionTransforming Growth Factor betaUbiquitin-Protein LigasesBone Morphogenetic Protein 2Methyl-CpG-Binding Protein 2Rlim protein, mouseRNA, Long NoncodingRNA, Small InterferingTransforming Growth Factor betaUbiquitin-Protein LigasesXIST non-coding RNABMP/TGF-βMeCP2Rett syndromeX inactivationXIST

Identifiers

PMID28143937
PMCPMC5321041
OpenAlexW2584305758

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.