Evidence map›Paper›PMID 28143930›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair.

Aaron M Fleming, Yun Ding, Cynthia J Burrows

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 233 papers.

0numbers the graph read from it
0cells of the map it votes in
233citing papers in PubMed
16.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

233 citing papers in PubMed, 345 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. DNA Structure-Dependent Enrichment of Oxidative Lesions.Chemical research in toxicology · 2026
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173 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Aaron M FlemingDepartment of Chemistry, University of Utah, Salt Lake City, UT 84112-0850 burrows@chem.utah.edu afleming@chem.utah.edu.
Yun DingDepartment of Chemistry, University of Utah, Salt Lake City, UT 84112-0850.
Cynthia J BurrowsDepartment of Chemistry, University of Utah, Salt Lake City, UT 84112-0850 burrows@chem.utah.edu afleming@chem.utah.edu.
University of Utah · US

Funding

Chemistry and Biology of Oxidized Purine Lesions in DNAR01CA090689 · NCI · UNIVERSITY OF UTAH · PI BURROWS, CYNTHIA J, DAVID, SHEILA SUE · 2002 to 2019
$5.5M
NCI NIH HHS R01 CA090689
6 · The paper itself

Abstract

Reactive oxygen species (ROS) have emerged as important cellular-signaling agents for cellular survival. Herein, we demonstrate that ROS-mediated oxidation of DNA to yield 8-oxo-7,8-dihydroguanine (OG) in gene promoters is a signaling agent for gene activation. Enhanced gene expression occurs when OG is formed in guanine-rich, potential G-quadruplex-forming sequences (PQS) in promoter-coding strands, initiating base excision repair (BER) by 8-oxoguanine DNA glycosylase (OGG1), yielding an abasic site (AP). The AP enables melting of the duplex to unmask the PQS, adopting a G-quadruplex fold in which apurinic/apyrimidinic endonuclease 1 (APE1) binds, but inefficiently cleaves, the AP for activation of vascular endothelial growth factor (

Indexed as

AnimalsDeoxyribonuclease (Pyrimidine Dimer)DNA-(Apurinic or Apyrimidinic Site) LyaseDNA DamageDNA GlycosylasesDNA RepairEpigenesis, GeneticGene Expression RegulationG-QuadruplexesGuanineHumansMiceOxidative StressPromoter Regions, GeneticReactive Oxygen SpeciesTranscription, Genetic8-hydroxyguanineAPEX1 protein, humanDeoxyribonuclease (Pyrimidine Dimer)DNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesGuanineNTHL1 protein, humanoxoguanine glycosylase 1, humanReactive Oxygen SpeciesVascular Endothelial Growth Factor Abase excision repairepigeneticsgene regulationG-quadruplexoxidative damage

Identifiers

PMID28143930
PMCPMC5347626
OpenAlexW2585186968

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.