Evidence map›Paper›PMID 28143926›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1.

Alicia K Michael, Jennifer L Fribourgh, Yogarany Chelliah, Colby R Sandate, Greg L Hura, Dina Schneidman-Duhovny, Sarvind M Tripathi, Joseph S Takahashi, Carrie L Partch

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 131 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Circadian rhythms and lung cancer biology and immunotherapy: Emerging opportunities and challenges.Chinese medical journal pulmonary and critical care medicine · 2026
    Review
  5. The CLOCK-BMAL1 complex in circadian regulation: structure, mechanisms, and therapeutic targeting.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
    Review
  6. Article
  7. Small Molecule Regulation of CLOCK:BMAL1 DNA Binding Activity.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Role of circadian clock in female embryo implantation.Frontiers in cell and developmental biology · 2025
    Review
  20. Review

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Alicia K MichaelDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064.
Jennifer L FribourghDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064.
Yogarany ChelliahDepartment of Neuroscience, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Colby R SandateDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064.
Greg L HuraDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064.
Dina Schneidman-DuhovnySchool of Computer Science and Engineering, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Sarvind M TripathiDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064.ORCID 0000-0002-6959-0577
Joseph S TakahashiDepartment of Neuroscience, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Carrie L PartchDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064; cpartch@ucsc.edu.
University of California, Santa Cruz · USHoward Hughes Medical Institute · USHebrew University of Jerusalem · ILLawrence Berkeley National Laboratory · US

Funding

Exploring the structural basis for 24-hour timekeeping in mammalsR01GM107069 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PARTCH, CARRIE L · 2013 to 2020
$3.2M
Disruption of the circadian clock by a cancer/testis antigenF31CA189660 · NCI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI MICHAEL, ALICIA · 2014 to 2016
$112k
NCI NIH HHS F31 CA189660NIGMS NIH HHS R01 GM107069
6 · The paper itself

Abstract

The basic helix-loop-helix PAS domain (bHLH-PAS) transcription factor CLOCK:BMAL1 (brain and muscle Arnt-like protein 1) sits at the core of the mammalian circadian transcription/translation feedback loop. Precise control of CLOCK:BMAL1 activity by coactivators and repressors establishes the ∼24-h periodicity of gene expression. Formation of a repressive complex, defined by the core clock proteins cryptochrome 1 (CRY1):CLOCK:BMAL1, plays an important role controlling the switch from repression to activation each day. Here we show that CRY1 binds directly to the PAS domain core of CLOCK:BMAL1, driven primarily by interaction with the CLOCK PAS-B domain. Integrative modeling and solution X-ray scattering studies unambiguously position a key loop of the CLOCK PAS-B domain in the secondary pocket of CRY1, analogous to the antenna chromophore-binding pocket of photolyase. CRY1 docks onto the transcription factor alongside the PAS domains, extending above the DNA-binding bHLH domain. Single point mutations at the interface on either CRY1 or CLOCK disrupt formation of the ternary complex, highlighting the importance of this interface for direct regulation of CLOCK:BMAL1 activity by CRY1.

Indexed as

Amino Acid SequenceAnimalsARNTL Transcription FactorsBinding SitesCircadian ClocksCLOCK ProteinsCryptochromesCrystallography, X-RayMiceModels, MolecularMutationProtein BindingProtein DomainsSf9 CellsSpodopteraARNTL Transcription FactorsCLOCK ProteinsCry1 protein, mouseCryptochromescircadian rhythmscryptochromeintegrative modelingPAS domains

Identifiers

PMID28143926
PMCPMC5321004
OpenAlexW2583671727

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.