ArticleBMC plant biology2017
Genome-Wide analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis).
Article in BMC plant biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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29 citing papers in PubMed, 60 citations in OpenAlex.
- Multiomics analysis of primary metabolism reveals the genetic basis of nitrogen partitioning modulated by ZmAVT1A-1 in maize.Nature genetics · 2026Article
- Genome-wide identification of AAAP gene family and expression analysis under abiotic stresses in Avena sativa.BMC genomics · 2025Article
- AAAP gene family evolution and transcriptional regulation in Eucalyptus grandis under nitrogen, phosphate and boron deficiencies.BMC plant biology · 2025Article
- Stable isotope labelling and gene expression analysis reveal dynamic nitrogen-supply mechanisms for rapid growth of Moso bamboo.Horticulture research · 2025Article
- Genome-wide identification of the AAAP gene family and expression analysis under tissue-specific expression in five legumes.BMC genomics · 2025Article
- Genome-Wide Identification and Expression Analysis of Amino Acid/Auxin Permease (AAAP) Genes in Grapes (Plants (Basel, Switzerland) · 2025Article
- Genome-wide identification of Solanum tuberosum L. AAAP gene family and its response to abiotic stress.PloS one · 2025Article
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- Genome-Wide Identification of theInternational journal of molecular sciences · 2024Article
- Genome-wide identification of AAAP gene family and expression analysis in response to saline-alkali stress in foxtail millet (Setaria italica L.).Scientific reports · 2024Article
- The spatiotemporal profile ofFrontiers in plant science · 2023Article
- Genome-Wide Analysis of theInternational journal of molecular sciences · 2022Article
- Identification, Phylogenetic and Expression Analyses of theInternational journal of molecular sciences · 2022Article
- Article
- Entailing the Next-Generation Sequencing and Metabolome for Sustainable Agriculture by Improving Plant Tolerance.International journal of molecular sciences · 2022Review
- Identification, systematic evolution and expression analyses of the AAAP gene family in Capsicum annuum.BMC genomics · 2021Article
- Genome-Wide Identification ofFrontiers in plant science · 2021Article
- A moso bamboo transcription factor, Phehdz1, positively regulates the drought stress response of transgenic rice.Plant cell reports · 2021Article
- Amino Acid Transporters in Plant Cells: A Brief Review.Plants (Basel, Switzerland) · 2020Review
- Article
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundMembers of the amino acid/auxin permease (AAAP) gene family play indispensable roles in various plant metabolism and biosynthesis processes. Comprehensive analysis of AAAP genes has been conducted in Arabidopsis, rice, maize and poplar, but has not been reported from moso bamboo. Phylogenetics, evolutionary patterns and further expression profiles analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis) will increase our understanding of this important gene family.
resultsIn this current study, we conducted phylogenetic, gene structure, promoter region, divergence time, expression patterns and qRT-PCR analysis of the 55 predicted AAAP genes in moso bamboo based on the availability of the moso bamboo genome sequence. We identified 55 putative AAAP (PeAAAP1-55) genes, which were divided into eight distinct subfamilies based on comparative phylogenetic analysis using 184 full-length protein sequences, including 55 sequences from moso bamboo, 58 sequences from rice and 71 sequences from maize. Analysis of evolutionary patterns and divergence showed that the PeAAAP genes have undergone a extensive duplication event approximately 12 million years ago (MYA) and that the split between AAAP family genes in moso bamboo and rice occurred approximately 27 MYA. The microarray analysis suggested that some genes play considerable roles in moso bamboo growth and development. We investigated the expression levels of the 16 AAP subfamily genes under abiotic stress (drought, salt and cold) by qRT-PCR to explore the potential contributions to stress response of individual PeAAAP genes in moso bamboo.
conclusionsThe results of this study suggest that PeAAAP genes play crucial roles in moso bamboo growth and development, especially in response to abiotic stress conditions. Our comprehensive, systematic study of the AAAPs gene family in moso bamboo will facilitate further analysis of the functions and evolution of AAAP genes in plants.
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