Evidence map›Paper›PMID 28143400›Full record

ArticleBMC genomics2017

The carotenoid biosynthetic and catabolic genes in wheat and their association with yellow pigments.

Pasqualina Colasuonno, Maria Luisa Lozito, Ilaria Marcotuli, Domenica Nigro, Angelica Giancaspro, Giacomo Mangini, Pasquale De Vita, Anna Maria Mastrangelo, Nicola Pecchioni, Kelly Houston and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
17.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 89 citations in OpenAlex.

  1. Genome-wide association studies reveal genomic regions for kernel-related traits in durum wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  2. Advancing provitamin A biofortification in sorghum: from allele mining and marker development to prebreeding and breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
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  9. Genetic and molecular basis of carotenoid metabolism in cereals.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Review
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  12. Expression ofPlants (Basel, Switzerland) · 2022
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  19. ABA Metabolism and Homeostasis in Seed Dormancy and Germination.International journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Pasqualina ColasuonnoDepartment of Agricultural and Environmental Science, University of Bari 'Aldo Moro', Via G. Amendola 165/A, 70126, Bari, Italy.
Maria Luisa LozitoDepartment of Soil, Plant and Food Sciences, University of Bari 'Aldo Moro', Via G. Amendola 165/A, Bari, Italy.
Ilaria MarcotuliDepartment of Agricultural and Environmental Science, University of Bari 'Aldo Moro', Via G. Amendola 165/A, 70126, Bari, Italy.
Domenica NigroDepartment of Soil, Plant and Food Sciences, University of Bari 'Aldo Moro', Via G. Amendola 165/A, Bari, Italy.
Angelica GiancasproDepartment of Soil, Plant and Food Sciences, University of Bari 'Aldo Moro', Via G. Amendola 165/A, Bari, Italy.
Giacomo ManginiDepartment of Soil, Plant and Food Sciences, University of Bari 'Aldo Moro', Via G. Amendola 165/A, Bari, Italy.
Pasquale De VitaCouncil for Agricultural Research and Economics - Cereal Research Centre, 71122, Foggia, Italy.
Anna Maria MastrangeloCouncil for Agricultural Research and Economics - Cereal Research Centre, 71122, Foggia, Italy.
Nicola PecchioniCouncil for Agricultural Research and Economics - Cereal Research Centre, 71122, Foggia, Italy.
Kelly HoustonThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
Rosanna SimeoneDepartment of Soil, Plant and Food Sciences, University of Bari 'Aldo Moro', Via G. Amendola 165/A, Bari, Italy.
Agata GadaletaDepartment of Agricultural and Environmental Science, University of Bari 'Aldo Moro', Via G. Amendola 165/A, 70126, Bari, Italy.
Antonio BlancoDepartment of Soil, Plant and Food Sciences, University of Bari 'Aldo Moro', Via G. Amendola 165/A, Bari, Italy. antonio.blanco@uniba.it.
University of Bari Aldo Moro · ITCereal Research Centre · ITJames Hutton Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn plants carotenoids play an important role in the photosynthetic process and photo-oxidative protection, and are the substrate for the synthesis of abscisic acid and strigolactones. In addition to their protective role as antioxidants and precursors of vitamin A, in wheat carotenoids are important as they influence the colour (whiteness vs. yellowness) of the grain. Understanding the genetic basis of grain yellow pigments, and identifying associated markers provide the basis for improving wheat quality by molecular breeding.

resultsTwenty-four candidate genes involved in the biosynthesis and catabolism of carotenoid compounds have been identified in wheat by comparative genomics. Single nucleotide polymorphisms (SNPs) found in the coding sequences of 19 candidate genes allowed their chromosomal location and accurate map position on two reference consensus maps to be determined. The genome-wide association study based on genotyping a tetraploid wheat collection with 81,587 gene-associated SNPs validated quantitative trait loci (QTLs) previously detected in biparental populations and discovered new QTLs for grain colour-related traits. Ten carotenoid genes mapped in chromosome regions underlying pigment content QTLs indicating possible functional relationships between candidate genes and the trait.

conclusionsThe availability of linked, candidate gene-based markers can facilitate breeding wheat cultivars with desirable levels of carotenoids. Identifying QTLs linked to carotenoid pigmentation can contribute to understanding genes underlying carotenoid accumulation in the wheat kernels. Together these outputs can be combined to exploit the genetic variability of colour-related traits for the nutritional and commercial improvement of wheat products.

Indexed as

CarotenoidsChromosome MappingGenetic Association StudiesGenome-Wide Association StudyMetabolic Networks and PathwaysPhenotypePhylogenyPigmentationPigments, BiologicalPolymorphism, Single NucleotideQuantitative Trait LociTriticumCarotenoidsPigments, BiologicalAssociation mappingCarotenoids genesFlour colourSNPWheatYellow pigments

Identifiers

PMID28143400
PMCPMC5286776
OpenAlexW2584376201

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.