ArticleBMC plant biology2017
Skewing in Arabidopsis roots involves disparate environmental signaling pathways.
Article in BMC plant biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Single-molecule long-read methylation profiling reveals regional DNA methylation regulated by Elongator Complex Subunit 2 in Arabidopsis roots experiencing spaceflight.Biology direct · 2024Article
- Quantitative analysis of the root posture ofQuantitative plant biology · 2024Article
- Glycome profiling and immunohistochemistry uncover changes in cell walls of Arabidopsis thaliana roots during spaceflight.NPJ microgravity · 2023Article
- Phosphate Deprivation Can Impair Mechano-Stimulated Cytosolic Free Calcium Elevation inPlants (Basel, Switzerland) · 2020Article
- Crosstalk between heterotrimeric G protein-coupled signaling pathways and WRKY transcription factors modulating plant responses to suboptimal micronutrient conditions.Journal of experimental botany · 2020Article
- Auxin-induced actin cytoskeleton rearrangements require AUX1.The New phytologist · 2020Article
- Root Skewing-Associated Genes Impact the Spaceflight Response ofFrontiers in plant science · 2020Article
- Impairment in karrikin but not strigolactone sensing enhances root skewing in Arabidopsis thaliana.The Plant journal : for cell and molecular biology · 2019Article
- Identification of Tea Plant Purple Acid Phosphatase Genes and Their Expression Responses to Excess Iron.International journal of molecular sciences · 2019Article
- A member of the CONSTANS-Like protein family is a putative regulator of reactive oxygen species homeostasis and spaceflight physiological adaptation.AoB PLANTS · 2019Article
- Comparing RNA-Seq and microarray gene expression data in two zones of theApplications in plant sciences · 2018Article
- Article
- The chimeric repressor for the GATA4 transcription factor improves tolerance to nitrogen deficiency inPlant biotechnology (Tokyo, Japan) · 2017Article
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Authors and funding
5 authors.
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No grant is acknowledged in the PubMed record.
Abstract
backgroundSkewing root patterns provide key insights into root growth strategies and mechanisms that produce root architectures. Roots exhibit skewing and waving when grown on a tilted, impenetrable surface. The genetics guiding these morphologies have been examined, revealing that some Arabidopsis ecotypes skew and wave (e.g. WS), while others skew insignificantly but still wave (e.g. Col-0). The underlying molecular mechanisms of skewing and waving remain unclear. In this study, transcriptome data were derived from two Arabidopsis ecotypes, WS and Col-0, under three tilted growth conditions in order to identify candidate genes involved in skewing.
resultsThis work identifies a number of genes that are likely involved in skewing, using growth conditions that differentially affect skewing and waving. Comparing the gene expression profiles of WS and Col-0 in different tilted growth conditions identified 11 candidate genes as potentially involved in the control of skewing. These 11 genes are involved in several different cellular processes, including sugar transport, salt signaling, cell wall organization, and hormone signaling.
conclusionsThis study identified 11 genes whose change in expression level is associated with root skewing behavior. These genes are involved in signaling and perception, rather than the physical restructuring of root. Future work is needed to elucidate the potential role of these candidate genes during root skewing.
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