Evidence map›Paper›PMID 28140566›Full record

ArticleBiochemistry2017

Roles of Copper and a Conserved Aspartic Acid in the Autocatalytic Hydroxylation of a Specific Tryptophan Residue during Cysteine Tryptophylquinone Biogenesis.

Heather R Williamson, Esha Sehanobish, Alan M Shiller, Antonio Sanchez-Amat, Victor L Davidson

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Heather R WilliamsonBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida , Orlando, Florida 32827, United States.ORCID 0000-0002-2413-659X
Esha SehanobishBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida , Orlando, Florida 32827, United States.
Alan M ShillerDivision of Marine Science, The University of Southern Mississippi, Stennis Space Center , Mississippi 39529, United States.
Antonio Sanchez-AmatDepartment of Genetics and Microbiology, University of Murcia , Murcia 30100, Spain.
Victor L DavidsonBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida , Orlando, Florida 32827, United States.ORCID 0000-0002-1966-7302
University of Central Florida · USStennis Space Center · USUniversidad de Murcia · ES

Funding

Structure Function & Biosynthesis of Respiratory EnzymesR37GM041574 · NIGMS · UNIVERSITY OF MISSISSIPPI MED CTR · PI DAVIDSON, VICTOR L · 2009 to 2018
$3.4M
NIGMS NIH HHS R37 GM041574
6 · The paper itself

Abstract

The first posttranslational modification step in the biosynthesis of the tryptophan-derived quinone cofactors is the autocatalytic hydroxylation of a specific Trp residue at position C-7 on the indole side chain. Subsequent modifications are catalyzed by modifying enzymes, but the mechanism by which this first step occurs is unknown. LodA possesses a cysteine tryptophylquinone (CTQ) cofactor. Metal analysis as well as spectroscopic and kinetic studies of the mature and precursor forms of a D512A LodA variant provides evidence that copper is required for the initial hydroxylation of the precursor protein and that if alternative metals are bound, the modification does not occur and the precursor is unstable. It is shown that the mature native LodA also contains loosely bound copper, which affects the visible absorbance spectrum and quenches the fluorescence spectrum that is attributed to the mature CTQ cofactor. When copper is removed, the fluorescence appears, and when it is added back to the protein, the fluorescence is quenched, indicating that copper reversibly binds in the proximity of CTQ. Removal of copper does not diminish the enzymatic activity of LodA. This distinguishes LodA from enzymes with protein-derived tyrosylquinone cofactors in which copper is present near the cofactor and is absolutely required for activity. Mechanisms are proposed for the role of copper in the hydroxylation of the unactivated Trp side chain. These results demonstrate that the reason that the highly conserved Asp512 is critical for LodA, and possibly all tryptophylquinone enzymes, is not because it is required for catalysis but because it is necessary for CTQ biosynthesis, more specifically to facilitate the initial copper-dependent hydroxylation of a specific Trp residue.

Indexed as

Amino Acid OxidoreductasesAspartic AcidBacterial ProteinsCopperDipeptidesHydroxylationIndolequinonesMarinomonasRecombinant ProteinsSpectrometry, FluorescenceTryptophanAmino Acid OxidoreductasesAspartic AcidBacterial ProteinsCoppercysteine tryptophylquinoneDipeptidesIndolequinonesRecombinant ProteinsTryptophan

Identifiers

PMID28140566
PMCPMC5347147
OpenAlexW2584133015

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.