ArticleScientific data2017
De novo transcriptome assemblies of four accessions of the metal hyperaccumulator plant Noccaea caerulescens.
Article in Scientific data, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- Transcriptome Analysis Reveals the Stress Tolerance Mechanisms of Cadmium inPlants (Basel, Switzerland) · 2023Article
- An updated de novo transcriptome for green ash (Fraxinus pennsylvanica).G3 (Bethesda, Md.) · 2023Article
- Multimodal synchrotron X-ray fluorescence imaging reveals elemental distribution in seeds and seedlings of the Zn-Cd-Ni hyperaccumulator Noccaea caerulescens.Metallomics : integrated biometal science · 2022Article
- Defining key metabolic roles in osmotic adjustment and ROS homeostasis in the recretohalophyte Karelinia caspia under salt stress.Physiologia plantarum · 2022Article
- Pilot RNA-seq data from 24 species of vascular plants at Harvard Forest.Applications in plant sciences · 2021Article
- Elucidating the Genetic Architecture of Fiber Quality in Hemp (Frontiers in genetics · 2020Article
- Hybrid de novo transcriptome assembly of poinsettia (Euphorbia pulcherrima Willd. Ex Klotsch) bracts.BMC genomics · 2019Article
- Defence transcriptome assembly and pathogenesis related gene family analysis in Pinus tecunumanii (low elevation).BMC genomics · 2018Article
- The leaf transcriptome of fennel (Foeniculum vulgare Mill.) enables characterization of the t-anethole pathway and the discovery of microsatellites and single-nucleotide variants.Scientific reports · 2018Article
- High QualityFrontiers in molecular biosciences · 2018Article
- De novo transcriptome assembly for the spiny mouse (Acomys cahirinus).Scientific reports · 2017Article
- De novo transcriptome assemblies of four accessions of the metal hyperaccumulator plant Noccaea caerulescens.Scientific data · 2017Article
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5 authors.
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Abstract
Noccaea caerulescens of the Brassicaceae family has become the key model plant among the metal hyperaccumulator plants. Populations/accessions of N. caerulescens from geographic locations with different soil metal concentrations differ in their ability to hyperaccumulate and hypertolerate metals. Comparison of transcriptomes in several accessions provides candidates for detailed exploration of the mechanisms of metal accumulation and tolerance and local adaptation. This can have implications in the development of plants for phytoremediation and improved mineral nutrition. Transcriptomes from root and shoot tissues of four N. caerulescens accessions with contrasting Zn, Cd and Ni hyperaccumulation and tolerance traits were sequenced with Illumina Hiseq2000. Transcriptomes were assembled using the Trinity de novo assembler and were annotated and the protein sequences predicted. The comparison against the BUSCO plant early release dataset indicated high-quality assemblies. The predicted protein sequences have been clustered into ortholog groups with closely related species. The data serve as important reference sequences in whole transcriptome studies, in analyses of genetic differences between the accessions and other species, and for primer design.
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