Evidence map›Paper›PMID 28139744›Full record

ArticleScientific reports2017

Transcriptional heterogeneity in the lactase gene within cell-type is linked to the epigenome.

Edward Oh, Richie Jeremian, Gabriel Oh, Daniel Groot, Miki Susic, KwangHo Lee, Kelly Foy, Peter W Laird, Arturas Petronis, Viviane Labrie

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
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  5. Article
  6. Review
  7. CTCF and cellular heterogeneity.Cell & bioscience · 2019
    Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Edward OhKrembil Family Epigenetics Laboratory, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Richie JeremianKrembil Family Epigenetics Laboratory, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Gabriel OhKrembil Family Epigenetics Laboratory, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Daniel GrootKrembil Family Epigenetics Laboratory, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Miki SusicKrembil Family Epigenetics Laboratory, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
KwangHo LeeCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI, USA.
Kelly FoyCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI, USA.
Peter W LairdCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI, USA.
Arturas PetronisKrembil Family Epigenetics Laboratory, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Viviane LabrieKrembil Family Epigenetics Laboratory, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Centre for Addiction and Mental Health · CAVan Andel Institute · US

Funding

DNA METHYLOME ANALYSIS IN BIPOLAR DISORDERR01MH088413 · NIMH · CENTRE FOR ADDICTION AND MENTAL HEALTH · PI PETRONIS, ART · 2009 to 2013
$4.1M
DNA METHYLOME STUDY IN TYPE 1 DIABETESDP3DK085698 · NIDDK · CENTRE FOR ADDICTION AND MENTAL HEALTH · PI PETRONIS, ART · 2009 to 2009
$3.1M
The Role of DNA Methylation in Tumor MaintenanceR01CA157918 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI LAIRD, PETER W · 2012 to 2016
$1.9M
Visualizing the effect of epigenetic modifications on transcription and mutationR01DA030325 · NIDA · VAN ANDEL RESEARCH INSTITUTE · PI LAIRD, PETER W · 2010 to 2014
$1.9M
CIHR MOP-119451CIHR MOP-199170CIHR MOP-77689NCI NIH HHS R01 CA157918NIDA NIH HHS R01 DA030325NIDDK NIH HHS DP3 DK085698NIMH NIH HHS R01 MH088413
6 · The paper itself

Abstract

Transcriptional variation in histologically- and genetically- identical cells is a widespread phenomenon in tissues, yet the processes conferring this heterogeneity are not well understood. To identify contributing factors, we analyzed epigenetic profiles associated with the in vivo transcriptional gradient of the mouse lactase gene (Lct), which occurs in enterocytes along the proximal-to-distal axis of the small intestine. We found that epigenetic signatures at enhancer and promoter elements aligns with transcriptional variation of Lct in enterocytes. Age and phenotype-specific environmental cues (lactose exposure after weaning) induced changes to epigenetic modifications and CTCF binding at select regulatory elements, which corresponded to the alterations in the intestinal Lct mRNA gradient. Thus, epigenetic modifications in combination with CTCF binding at regulatory elements account for the transcriptional gradient in Lct in cells of the same type. Epigenetic divergence within enterocytes may contribute to the functional specialization of intestinal subregions.

Indexed as

Epigenesis, GeneticAnimalsCCCTC-Binding FactorEnhancer Elements, GeneticEnterocytesGene Expression Regulation, DevelopmentalLactaseLactoseMiceMice, Inbred C57BLPromoter Regions, GeneticRNA, MessengerCCCTC-Binding FactorLactaseLactoseRNA, Messenger

Identifiers

PMID28139744
PMCPMC5282553
OpenAlexW2584544965

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.