Evidence map›Paper›PMID 28138846›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2017

Chromosome-Range Whole-Genome High-Throughput Experimental Haplotyping by Single-Chromosome Microdissection.

Li Ma, Wenzhi Li, Qing Song

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Novel Insight into the Role of Squalene Epoxidase (International journal of molecular sciences · 2023
    Article
  5. Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time.International journal of molecular sciences · 2021
    Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Li Ma4DGenome Inc, Atlanta, GA, USA. lma@msm.edu.
Wenzhi LiCardiovascular Research Institute and Department of Medicine, Morehouse School of Medicine, 720 Westview Dr SW, Atlanta, GA, 30310, USA.
Qing Song4DGenome Inc, Atlanta, GA, USA. qsong@msm.edu.

Funding

TRANSCRIPTION FACTORS AND PROSTATE CANCERG12RR003034 · NCRR · MOREHOUSE SCHOOL OF MEDICINE · PI ZHAO, XUEYING · 1986 to 2011
$32.4M
Research Desogn and Biostatistics CoreU54MD007588 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI MAYBERRY, ROBERT M · 2012 to 2018
$24.8M
TRANSPLANTATION OF EXOSOMES FROM HYPOXIA-PRECONDITIONED ADIPOSE-DERIVED STEM CELLS PROMOTES ANGIOGENESIS IN ISCHEMIC HEARTG12MD007602 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI BOND, VINCENT C · 2012 to 2017
$18.4M
Minority Health-GRID Network: A Genomics Resource for Health Disparity ResearchRC4MD005964 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI DAVIS, ROBERT LOWELL, NICKERSON, DEBORAH A · 2010 to 2010
$13.3M
ENHANCEMENT OF CARDIOVASCULAR AND RELATED RESEARCH AREASUH1HL003676 · NHLBI · MOREHOUSE SCHOOL OF MEDICINE · PI GIBBONS, GARY HUGH · 1996 to 2004
$5.3M
RECRUITMENT COREU54RR014758 · NCRR · MOREHOUSE SCHOOL OF MEDICINE · PI LI, RONGLING · 1999 to 2004
$4.2M
MSM Cardiovascular Center of ExcellenceR25HL003676 · NHLBI · MOREHOUSE SCHOOL OF MEDICINE · PI GIBBONS, GARY H · 2005 to 2009
$3.7M
Haplotype Analysis in Linkage Disequilibrium MappingR01GM074913 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ZHANG, KUI · 2006 to 2010
$1.1M
Determining the Phased Genome SequencesR21HG006173 · NHGRI · MOREHOUSE SCHOOL OF MEDICINE · PI SONG, QING · 2012 to 2013
$389k
NCRR NIH HHS G12 RR003034NCRR NIH HHS U54 RR014758NHGRI NIH HHS R21 HG006173NHLBI NIH HHS R25 HL003676NHLBI NIH HHS UH1 HL003676NIGMS NIH HHS R01 GM074913NIMHD NIH HHS G12 MD007602NIMHD NIH HHS RC4 MD005964NIMHD NIH HHS U54 MD007588
6 · The paper itself

Abstract

Haplotype is fundamental genetic information; it provides essential information for deciphering the functional and etiological roles of genetic variants. As haplotype information is closely related to the functional and etiological impact of genetic variants, it is widely anticipated that haplotype information will be extremely valuable in a wide spectra of applications, including academic research, clinical diagnosis of genetic disease and in the pharmaceutical industry. Haplotyping is essential for LD (linkage disequilibrium) mapping, functional studies on cis-interactions, big data imputation, association studies, population studies, and evolutionary studies. Unfortunately, current sequencing technologies and genotyping arrays do not routinely deliver this information for each individual, but yield only unphased genotypes. Here, we describe a high-throughput and cost-effective experimental protocol to obtain high-resolution chromosomal haplotypes of each individual diploid (including human) genome by the single-chromosome microdissection and sequencing approach.

Indexed as

AlgorithmsHaplotypesLinkage DisequilibriumMicrodissectionPolymorphism, Single NucleotideSequence Analysis, DNAChromosome-lengthExperimentalHaplotypeHigh-throughputWhole-genome

Identifiers

PMID28138846
PMCPMC6372095

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.