Evidence map›Paper›PMID 28138721›Full record

ArticleMicrobial ecology2017

Cyanobacterial Contribution to Travertine Deposition in the Hoyoux River System, Belgium.

Julia Kleinteich, Stjepko Golubic, Igor S Pessi, David Velázquez, Jean-Yves Storme, François Darchambeau, Alberto V Borges, Philippe Compère, Gudrun Radtke, Seong-Joo Lee and 2 more

Abstract read
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Article in Microbial ecology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Julia KleinteichInBios Center for Protein Engineering, University of Liège, B-4000, Liège, Belgium. Julia.Kleinteich@gmail.com.
Stjepko GolubicInBios Center for Protein Engineering, University of Liège, B-4000, Liège, Belgium.
Igor S PessiInBios Center for Protein Engineering, University of Liège, B-4000, Liège, Belgium.
David VelázquezInBios Center for Protein Engineering, University of Liège, B-4000, Liège, Belgium.
Jean-Yves StormePalaeobiogeology, Palaeobotany, Palaeopalynology, Department of Geology, UR Geology B18, University of Liège, B-4000, Liège, Belgium.
François DarchambeauChemical Oceanography Unit, Institut de Physique (B5), University of Liege, B-4000, Liège, Belgium.
Alberto V BorgesChemical Oceanography Unit, Institut de Physique (B5), University of Liege, B-4000, Liège, Belgium.
Philippe CompèreDepartment of Biology, Ecology and Evolution (BEE)/Centre of Aid for Research and Education in Microscopy (CAREM), University of Liège, B-4000, Liège, Belgium.
Gudrun RadtkeHessisches Landesamt für Naturschutz, Umwelt und Geologie, Rheingaustr. 186, D-65203, Wiesbaden, Germany.
Seong-Joo LeeDepartment of Geology, Kyungpook National University, 1370 Sankyuck-dong, Daegu, 702-701, South Korea.
Emmanuelle J JavauxPalaeobiogeology, Palaeobotany, Palaeopalynology, Department of Geology, UR Geology B18, University of Liège, B-4000, Liège, Belgium.
Annick WilmotteInBios Center for Protein Engineering, University of Liège, B-4000, Liège, Belgium.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Travertine deposition is a landscape-forming process, usually building a series of calcareous barriers differentiating the river flow into a series of cascades and ponds. The process of carbonate precipitation is a complex relationship between biogenic and abiotic causative agents, involving adapted microbial assemblages but also requiring high levels of carbonate saturation, spontaneous degassing of carbon dioxide and slightly alkaline pH. We have analysed calcareous crusts and water chemistry from four sampling sites along the Hoyoux River and its Triffoy tributary (Belgium) in winter, spring, summer and autumn 2014. Different surface textures of travertine deposits correlated with particular microenvironments and were influenced by the local water flow. In all microenvironments, we have identified the cyanobacterium Phormidium incrustatum (Nägeli) Gomont as the organism primarily responsible for carbonate precipitation and travertine fabric by combining morphological analysis with molecular sequencing (16S rRNA gene and ITS, the Internal Transcribed Spacer fragments), targeting both field populations and cultures to exclude opportunistic microorganisms responding favourably to culture conditions. Several closely related cyanobacterial strains were cultured; however, only one proved identical with the sequences obtained from the field population by direct PCR. This strain was the dominant primary producer in the calcareous deposits under study and in similar streams in Europe. The dominance of one organism that had a demonstrated association with carbonate precipitation presented a valuable opportunity to study its function in construction, preservation and fossilisation potential of ambient temperature travertine deposits. These relationships were examined using scanning electron microscopy and Raman microspectroscopy.

Indexed as

RiversBelgiumCarbonatesCyanobacteriaDNA, Ribosomal SpacerEuropeRNA, Ribosomal, 16SCarbonatesDNA, Ribosomal SpacerRNA, Ribosomal, 16SCalcareous tufaCulture supportCyanobacteriarRNA operon sequencingTravertine deposition

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.