Evidence map›Paper›PMID 28138513›Full record

ArticleScience advances2016

KDM5 lysine demethylases are involved in maintenance of 3'UTR length.

Lauren P Blair, Zongzhi Liu, Ramon Lorenzo D Labitigan, Lizhen Wu, Dinghai Zheng, Zheng Xia, Erica L Pearson, Fathima I Nazeer, Jian Cao, Sabine M Lang and 7 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Emerging role ofFrontiers in molecular neuroscience · 2026
    Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. The emerging role of KDM5A in human cancer.Journal of hematology & oncology · 2021
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Lauren P BlairDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.
Zongzhi LiuDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.
Ramon Lorenzo D LabitiganDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.
Lizhen WuDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.ORCID 0000-0002-0452-2602
Dinghai ZhengDepartment of Microbiology, Biochemistry and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ 07103, USA.
Zheng XiaDivision of Biostatistics, Dan L Duncan Comprehensive Cancer Center and Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0000-0003-3364-8324
Erica L PearsonDepartment of Developmental, Molecular, and Chemical Biology, Tufts University School of Medicine, Boston, MA 02111, USA.
Fathima I NazeerDepartment of Developmental, Molecular, and Chemical Biology, Tufts University School of Medicine, Boston, MA 02111, USA.
Jian CaoDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.
Sabine M LangDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.ORCID 0000-0002-6486-5287
Rachel J RinesDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.ORCID 0000-0002-5700-8885
Samuel G MackintoshDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR 72032, USA.
Claire L MooreDepartment of Developmental, Molecular, and Chemical Biology, Tufts University School of Medicine, Boston, MA 02111, USA.
Wei LiDivision of Biostatistics, Dan L Duncan Comprehensive Cancer Center and Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Bin TianDepartment of Microbiology, Biochemistry and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ 07103, USA.
Alan J TackettDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR 72032, USA.
Qin YanDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.ORCID 0000-0003-4077-453X
Yale University · USTufts University · USBaylor College of Medicine · USRutgers, The State University of New Jersey · USUniversity of Arkansas for Medical Sciences · US

Funding

Understanding Hesitant AdoptersP20GM103429 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI Lawrence E Cornett, JERRY WARE · 2012 to 2026
$60.9M
Study of the Cell-specific Inflammasome Responses During Defense Against Gram-negative BacteriaP20GM103625 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI SMELTZER, MARK S · 2012 to 2021
$21.5M
Arkansas Center for Clinical and Translational ResearchUL1TR000039 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$10.0M
Regulation of Alternative Cleavage and PolyadenylationR01GM084089 · NIGMS · WISTAR INSTITUTE · PI TIAN, BIN · 2008 to 2023
$6.7M
Center for Protein Structure and FunctionP30GM103450 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI MILLETT, FRANCIS S · 2012 to 2014
$3.2M
Computational and Experimental Modeling of Epigenetic DNA MethylationR01HG007538 · NHGRI · UNIVERSITY OF CALIFORNIA-IRVINE · PI LI, WEI · 2014 to 2018
$1.9M
Using ChAP-MS to Study Macromolecular Chromatin Composition during TranscriptionR01GM106024 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI TACKETT, ALAN, TAVERNA, SEAN D. · 2013 to 2016
$1.2M
Development of MassSQUIRM to Quantitatively Measure Lysine MethylationR33CA173264 · NCI · UNIV OF ARKANSAS FOR MED SCIS · PI TACKETT, ALAN · 2013 to 2015
$430k
IDENTIFYING EPIGENETIC CHANGES CRITICAL FOR TRASTUZUMAB RESISTANCER21CA187862 · NCI · YALE UNIVERSITY · PI YAN, QIN · 2015 to 2016
$398k
TARGETING EPIGENETIC REGULATORS TO SUPPRESS BREAST CANCER METASTASISR21CA191548 · NCI · YALE UNIVERSITY · PI YAN, QIN · 2015 to 2016
$398k
NCATS NIH HHS UL1 TR000039NCI NIH HHS R21 CA187862NCI NIH HHS R21 CA191548NCI NIH HHS R33 CA173264NHGRI NIH HHS R01 HG007538NIGMS NIH HHS P20 GM103429NIGMS NIH HHS P20 GM103625NIGMS NIH HHS P30 GM103450NIGMS NIH HHS R01 GM084089NIGMS NIH HHS R01 GM106024
6 · The paper itself

Abstract

The complexity by which cells regulate gene and protein expression is multifaceted and intricate. Regulation of 3' untranslated region (UTR) processing of mRNA has been shown to play a critical role in development and disease. However, the process by which cells select alternative mRNA forms is not well understood. We discovered that the

Indexed as

3' Untranslated RegionsBreast NeoplasmsCyclin D1DEAD-box RNA HelicasesFemaleHumansJumonji Domain-Containing Histone DemethylasesMCF-7 CellsNeoplasm ProteinsNuclear ProteinsRepressor ProteinsRetinoblastoma-Binding Protein 2Ribonuclease IIISaccharomyces cerevisiaeSaccharomyces cerevisiae Proteins3' Untranslated RegionsCCND1 protein, humanCyclin D1DEAD-box RNA HelicasesDICER1 protein, humanJHD2 protein, S cerevisiaeJumonji Domain-Containing Histone DemethylasesKDM5A protein, humanKDM5B protein, humanNeoplasm ProteinsNuclear ProteinsRepressor ProteinsRetinoblastoma-Binding Protein 2Ribonuclease IIISaccharomyces cerevisiae Proteinsalternative polyadenylationCCND1DICER1JARID1Jhd2KDM5KDM5AKDM5BKDM5CLysine demethylase 5

Identifiers

PMID28138513
PMCPMC5262454
OpenAlexW2552021993

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.