Evidence map›Paper›PMID 28137874›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

IgD class switching is initiated by microbiota and limited to mucosa-associated lymphoid tissue in mice.

Jin Huk Choi, Kuan-Wen Wang, Duanwu Zhang, Xiaowei Zhan, Tao Wang, Chun-Hui Bu, Cassie L Behrendt, Ming Zeng, Ying Wang, Takuma Misawa and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Interleukin-1 signaling and CD4Frontiers in immunology · 2025
    Article
  3. Article
  4. CCR7A defines a subpopulation of IgDFrontiers in immunology · 2025
    Article
  5. Review
  6. Article
  7. IgDPathogens (Basel, Switzerland) · 2024
    Article
  8. Essential role of MFSD1-GLMP-GIMAP5 in lymphocyte survival and liver homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Essential requirement for IER3IP1 in B cell development.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Teleost IgDiScience · 2023
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Essential requirement for nicastrin in marginal zone and B-1 B cell development.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Jin Huk ChoiCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Kuan-Wen WangCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Duanwu ZhangCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Xiaowei ZhanCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Tao WangCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Chun-Hui BuCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Cassie L BehrendtDepartment of Immunology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Ming ZengCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Ying WangCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Takuma MisawaCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Xiaohong LiCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Miao TangCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Xiaoming ZhanCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Lindsay ScottCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Sara HildebrandCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Anne R MurrayCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Eva Marie Y MorescoCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Lora V HooperDepartment of Immunology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Bruce BeutlerCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX 75390; Bruce.Beutler@UTSouthwestern.edu.
The University of Texas Southwestern Medical Center · USHoward Hughes Medical Institute · US

Funding

Systems Biology CoreU19AI100627 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI ULEVITCH, RICHARD J · 2012 to 2021
$49.1M
Automated Forward Genetic Analysis of Adaptive ImmunityR01AI125581 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI BRUCE A BEUTLER · 2016 to 2026
$19.5M
Mutagenetic analysis of LPS responsesR37GM067759 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI BEUTLER, BRUCE A · 2007 to 2016
$8.6M
Microbial Regulation of Retinol Transport and its Role in Intestinal ImmunityR01DK070855 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI LORA V HOOPER · 2005 to 2026
$7.9M
NIAID NIH HHS R01 AI125581NIAID NIH HHS U19 AI100627NIDDK NIH HHS R01 DK070855NIGMS NIH HHS R37 GM067759
6 · The paper itself

Abstract

Class-switch recombination (CSR) alters the Ig isotype to diversify antibody effector functions. IgD CSR is a rare event, and its regulation is poorly understood. We report that deficiency of 53BP1, a DNA damage-response protein, caused age-dependent overproduction of secreted IgD resulting from increased IgD CSR exclusively within B cells of mucosa-associated lymphoid tissues. IgD overproduction was dependent on activation-induced cytidine deaminase, hematopoietic MyD88 expression, and an intact microbiome, against which circulating IgD, but not IgM, was reactive. IgD CSR occurred via both alternative nonhomologous end-joining and homologous recombination pathways. Microbiota-dependent IgD CSR also was detected in nasal-associated lymphoid tissue of WT mice. These results identify a pathway, present in WT mice and hyperactivated in 53BP1-deficient mice, by which microbiota signal via Toll-like receptors to elicit IgD CSR.

Indexed as

Immunoglobulin Class SwitchingAnimalsCytidine DeaminaseDNA End-Joining RepairFemaleImmunoglobulin DLymphoid TissueMaleMice, Inbred C57BLMice, KnockoutMicrobiotaMucous MembraneMyeloid Differentiation Factor 88Recombination, GeneticTumor Suppressor p53-Binding Protein 1Cytidine DeaminaseImmunoglobulin DMyd88 protein, mouseMyeloid Differentiation Factor 88Trp53bp1 protein, mouseTumor Suppressor p53-Binding Protein 153BP1class-switch recombinationIgDmicrobiotaToll-like receptor

Identifiers

PMID28137874
PMCPMC5321007
OpenAlexW2580456492

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.