ArticleGenome research2017
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling.
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In one paragraph
Article in Genome research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
24 citing papers in PubMed, 47 citations in OpenAlex.
- Intron turnover of slc26a1 and slc26a2 and convergence of intron insertion sites.Scientific reports · 2025Article
- Maternal deposition of hormones and contaminants shape the gonadal transcriptome in American alligators.Proceedings. Biological sciences · 2025Article
- Insights into avian molecular cytogenetics-with reptilian comparisons.Molecular cytogenetics · 2024Review
- Evolution of ancient satellite DNAs in extant alligators and caimans (Crocodylia, Reptilia).BMC biology · 2024Article
- Convergent genomic signatures associated with vertebrate viviparity.BMC biology · 2024Article
- Genome-wide DNA methylation patterns harbour signatures of hatchling sex and past incubation temperature in a species with environmental sex determination.Molecular ecology · 2022Article
- The Rattlesnake W Chromosome: A GC-Rich Retroelement Refugium with Retained Gene Function Across Ancient Evolutionary Strata.Genome biology and evolution · 2022Article
- Article
- Chromosome-Level Reference Genome Assembly for the American Pika (Ochotona princeps).The Journal of heredity · 2021Article
- Effects of global warming on species with temperature-dependent sex determination: Bridging the gap between empirical research and management.Evolutionary applications · 2021Review
- A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes.Genome research · 2021Article
- Accurate assembly of the olive baboon (Papio anubis) genome using long-read and Hi-C data.GigaScience · 2020Article
- Assessing the Ability of Developmentally Precocious Estrogen Signaling to Recapitulate Ovarian Transcriptomes and Follicle Dynamics in Alligators from a Contaminated Lake.Environmental health perspectives · 2020Article
- Article
- Review
- Genome reconstruction and haplotype phasing using chromosome conformation capture methodologies.Briefings in functional genomics · 2020Article
- A High-Quality Reference Genome Assembly of the Saltwater Crocodile, Crocodylus porosus, Reveals Patterns of Selection in Crocodylidae.Genome biology and evolution · 2020Article
- Role for androgens in determination of ovarian fate in the common snapping turtle, Chelydra serpentina.General and comparative endocrinology · 2019Article
- Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019Review
- Improving Illumina assemblies with Hi-C and long reads: An example with the North African dromedary.Molecular ecology resources · 2019Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
23 authors at 13 institutions in 2 countries.
Edward S RiceDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
Satomi KohnoDepartment of Biology, St. Cloud State University, St. Cloud, Minnesota 56301, USA.
John St JohnDriver Group, LLC, San Francisco, California 94158, USA.
Son PhamBioTuring, Incorporated, San Diego, California 92121, USA.
Jonathan HowardDepartment of Biochemistry, Stanford University, Stanford, California 94305, USA.
Liana F LareauCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, California 94720, USA.
Brendan L O'ConnellDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
Glenn HickeyDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
Joel ArmstrongDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
Alden DeranDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
Ian FiddesDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
Roy N PlattDepartment of Biological Sciences, Texas Tech University, Lubbock, Texas 79409, USA.
Cathy GreshamInstitute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, Mississippi 39762, USA.
Fiona McCarthySchool of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, Arizona 85721, USA.
Colin KernDepartment of Animal Science, University of California, Davis, California 95616, USA.
David HaanDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
Tan PhanHCM University of Science, Ho Chí Minh, Vietnam 748500.
Carl SchmidtDepartment of Animal and Food Sciences, University of Delaware, Newark, Delaware 19717, USA.
Jeremy R SanfordDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064, USA.
David A RayDepartment of Biological Sciences, Texas Tech University, Lubbock, Texas 79409, USA.
Benedict PatenCenter for Biomolecular Science and Engineering, University of California, Santa Cruz, California 95064, USA.
Louis J GuilletteDepartment of Obstetrics and Gynecology, Marine Biomedicine and Environmental Science Center, Hollings Marine Laboratory, Medical University of South Carolina, Charleston, South Carolina 29412, USA.
Richard E GreenDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
University of California, Santa Cruz · USQB3 · USTexas Tech University · USHo Chi Minh City University of Science · VNMedical University of South Carolina · USMississippi State University · USStanford University · USSt. Cloud State University · USUniversity of Arizona · USUniversity of California, Davis · USUniversity of California, San Francisco · USUniversity of Delaware · USUniversity of San Diego · US
Funding
Training SubprojectU54HG007990 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAUSSLER, DAVID H, PATTERSON, DAVID · 2014 to 2018
$14.8MRegulation of mRNA isoform fateR01GM109146 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SANFORD, JEREMY ROBERT · 2014 to 2017
$1.2MGenomic analysis of RNA binding protein target specificityR01GM085121 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SANFORD, JEREMY ROBERT · 2008 to 2010
$1.1MControlling toxic RNA with rapamycinR21AG042003 · NIA · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SANFORD, JEREMY ROBERT · 2013 to 2014
$420kNHGRI NIH HHS U54 HG007990NIA NIH HHS R21 AG042003NIGMS NIH HHS R01 GM085121NIGMS NIH HHS R01 GM109146
Abstract
The American alligator,
Indexed as
Conserved SequenceGenomeSignal TransductionAlligators and CrocodilesAnimalsCCCTC-Binding FactorChromatinContig MappingEstrogensFemaleMaleSequence Analysis, DNASex Determination ProcessesSyntenyCCCTC-Binding FactorChromatinEstrogens
Identifiers
What OpenQuestion holds
Textmetadata
LicenceCC BY-NC
Read underepoch 390
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.