Evidence map›Paper›PMID 28135421›Full record

ArticleAmerican journal of respiratory cell and molecular biology2017

Hypoxia Sensing and Persistence Genes Are Expressed during the Intragranulomatous Survival of Mycobacterium tuberculosis.

Teresa A Hudock, Taylor W Foreman, Nirmalya Bandyopadhyay, Uma S Gautam, Ashley V Veatch, Denae N LoBato, Kaylee M Gentry, Nadia A Golden, Amy Cavigli, Michelle Mueller and 7 more

Abstract read
In one paragraph

Article in American journal of respiratory cell and molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Building Spatiotemporal Understanding ofACS infectious diseases · 2025
    Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Regulatory role ofFrontiers in microbiology · 2024
    Article
  14. Review
  15. Article
  16. Frontiers in cellular and infection microbiology · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Tuberculosis: The success tale of less explored dormantFrontiers in cellular and infection microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Teresa A Hudock1 Tulane National Primate Research Center, Covington, Louisiana.
Taylor W Foreman1 Tulane National Primate Research Center, Covington, Louisiana.
Nirmalya Bandyopadhyay3 Whitaker Biomedical Engineering Institute, Whiting School of Engineering, Johns Hopkins University, Baltimore, Maryland.
Uma S Gautam1 Tulane National Primate Research Center, Covington, Louisiana.
Ashley V Veatch1 Tulane National Primate Research Center, Covington, Louisiana.
Denae N LoBato1 Tulane National Primate Research Center, Covington, Louisiana.
Kaylee M Gentry1 Tulane National Primate Research Center, Covington, Louisiana.
Nadia A Golden1 Tulane National Primate Research Center, Covington, Louisiana.
Amy Cavigli1 Tulane National Primate Research Center, Covington, Louisiana.
Michelle Mueller1 Tulane National Primate Research Center, Covington, Louisiana.
Shen-An Hwang4 Department of Pathology and Laboratory Medicine, University of Texas Health Science Center, Houston, Texas.
Robert L Hunter4 Department of Pathology and Laboratory Medicine, University of Texas Health Science Center, Houston, Texas.
Xavier Alvarez1 Tulane National Primate Research Center, Covington, Louisiana.
Andrew A Lackner1 Tulane National Primate Research Center, Covington, Louisiana.ORCID 0000-0003-2162-1079
Joel S Bader3 Whitaker Biomedical Engineering Institute, Whiting School of Engineering, Johns Hopkins University, Baltimore, Maryland.
Smriti Mehra5 Department of Pathobiological Sciences, Louisiana State University School of Veterinary Medicine, Baton Rouge, Louisiana.
Deepak Kaushal1 Tulane National Primate Research Center, Covington, Louisiana.ORCID 0000-0003-3521-1257

Funding

Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
STABILITY' (symptomatic review during biologic therapy) Review in Inflammatory Bowel DiseaseP20GM103424 · NIGMS · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI Konstantin G Kousoulas · 2012 to 2026
$57.4M
BAA-NIH-NIAID-NCRR-DMID-03-036UC6AI058609 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI LACKNER, ANDREW A · 2003 to 2006
$21.1M
Genetic Requirements for the survival of Tubercle Bacilli in Nonhuman PrimatesR01AI089323 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI KAUSHAL, DEEPAK · 2010 to 2014
$3.2M
Transcriptomics of Tuberculosis Latency and Reactivation in PrimatesR01HL106790 · NHLBI · TULANE UNIVERSITY OF LOUISIANA · PI KAUSHAL, DEEPAK · 2010 to 2013
$3.1M
Research Training in Experimental Medicine and PathologyT32OD011124 · OD · TULANE UNIVERSITY OF LOUISIANA · PI BLAIR, ROBERT, RAPPAPORT, JAY · 2012 to 2019
$2.7M
Leica TCS SP8 Confocal Microscope SystemS10OD019964 · OD · TULANE UNIVERSITY OF LOUISIANA · PI LACKNER, ANDREW A · 2015 to 2015
$478k
Role of miRNA in lung damage during TB and TB/AIDS Co-infectionR21AI091457 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI KAUSHAL, DEEPAK · 2010 to 2011
$452k
NHLBI NIH HHS R01 HL106790NIAID NIH HHS R01 AI089323NIAID NIH HHS R21 AI091457NIAID NIH HHS UC6 AI058609NIGMS NIH HHS P20 GM103424NIH HHS P51 OD011104NIH HHS S10 OD019964NIH HHS T32 OD011124
6 · The paper itself

Abstract

Although it is accepted that the environment within the granuloma profoundly affects Mycobacterium tuberculosis (Mtb) and infection outcome, our ability to understand Mtb gene expression in these niches has been limited. We determined intragranulomatous gene expression in human-like lung lesions derived from nonhuman primates with both active tuberculosis (ATB) and latent TB infection (LTBI). We employed a non-laser-based approach to microdissect individual lung lesions and interrogate the global transcriptome of Mtb within granulomas. Mtb genes expressed in classical granulomas with central, caseous necrosis, as well as within the caseum itself, were identified and compared with other Mtb lesions in animals with ATB (n = 7) or LTBI (n = 7). Results were validated using both an oligonucleotide approach and RT-PCR on macaque samples and by using human TB samples. We detected approximately 2,900 and 1,850 statistically significant genes in ATB and LTBI lesions, respectively (linear models for microarray analysis, Bonferroni corrected, P < 0.05). Of these genes, the expression of approximately 1,300 (ATB) and 900 (LTBI) was positively induced. We identified the induction of key regulons and compared our results to genes previously determined to be required for Mtb growth. Our results indicate pathways that Mtb uses to ensure its survival in a highly stressful environment in vivo. A large number of genes is commonly expressed in granulomas with ATB and LTBI. In addition, the enhanced expression of the dormancy survival regulon was a key feature of lesions in animals with LTBI, stressing its importance in the persistence of Mtb during the chronic phase of infection.

Indexed as

Gene Expression Regulation, BacterialGenes, BacterialAnaerobiosisAnimalsGene Expression ProfilingGranulomaLungMacacaMicrobial ViabilityMycobacterium tuberculosisReal-Time Polymerase Chain ReactionRegulonReproducibility of ResultsTranscriptomeTuberculosisgranulomahypoxiamacaquemicrodissectionMycobacterium tuberculosis

Identifiers

PMID28135421
PMCPMC5449490

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.