Evidence map›Paper›PMID 28135252›Full record

ArticleNature immunology2017

The transcriptional regulator Aire binds to and activates super-enhancers.

Kushagra Bansal, Hideyuki Yoshida, Christophe Benoist, Diane Mathis

Abstract read
In one paragraph

Article in Nature immunology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 126 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Systematic and proactive evaluation of AIRE missense variant effects.bioRxiv : the preprint server for biology · 2025
    Article
  8. Informed clinical decisions by outfoxing human FOXN1 variants.The Journal of allergy and clinical immunology · 2025
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Topoisomerase 1 is required for the development and function of thymus.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Article
  16. Article
  17. Thymic Mimetic Cells: Ontogeny as Immunology.Annual review of cell and developmental biology · 2024
    Review
  18. Article
  19. Article
  20. Z-DNA marks the spot for AIRE.Cell research · 2024
    Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kushagra BansalDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts, USA.
Hideyuki YoshidaDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts, USA.
Christophe BenoistDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts, USA.
Diane MathisDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts, USA.
Harvard University · US

Funding

AIRE, a zinc-finger protein that controls autoimmunityR01DK060027 · NIDDK · JOSLIN DIABETES CENTER · PI DIANE J MATHIS · 2002 to 2026
$7.4M
The molecular mechanism of Aire: partnering with DNA-PKR01AI088204 · NIAID · HARVARD MEDICAL SCHOOL · PI DIANE J MATHIS · 2011 to 2026
$5.7M
NIAID NIH HHS HHSN272201300006CNIAID NIH HHS R01 AI088204NIDDK NIH HHS R01 DK060027
6 · The paper itself

Abstract

Aire is a transcription factor that controls T cell tolerance by inducing the expression of a large repertoire of genes specifically in thymic stromal cells. It interacts with scores of protein partners of diverse functional classes. We found that Aire and some of its partners, notably those implicated in the DNA-damage response, preferentially localized to and activated long chromatin stretches that were overloaded with transcriptional regulators, known as super-enhancers. We also identified topoisomerase 1 as a cardinal Aire partner that colocalized on super-enhancers and was required for the interaction of Aire with all of its other associates. We propose a model that entails looping of super-enhancers to efficiently deliver Aire-containing complexes to local and distal transcriptional start sites.

Indexed as

Chromatin Assembly and DisassemblyTranscriptional ActivationAIRE ProteinAnimalsAutoimmunityDNA DamageDNA RepairDNA Topoisomerases, Type IEnhancer Elements, GeneticEpigenesis, GeneticGene Regulatory NetworksHEK293 CellsHumansImmune ToleranceMiceMice, Inbred C57BLAIRE ProteinDNA Topoisomerases, Type ITranscription Factors

Identifiers

PMID28135252
PMCPMC5310976
OpenAlexW2580332642

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.