Evidence map›Paper›PMID 28134995›Full record

ArticleThe New phytologist2017

An operon for production of bioactive gibberellin A

Raimund Nagel, Paula C G Turrini, Ryan S Nett, Jan E Leach, Valérie Verdier, Marie-Anne Van Sluys, Reuben J Peters

Open access · greenAbstract read
In one paragraph

Article in The New phytologist, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
8.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
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  4. The Exometabolome ofMetabolites · 2024
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  11. Overexpression ofFrontiers in plant science · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Raimund NagelRoy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Paula C G TurriniDepartamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, 05508-090, São Paulo, Brasil.
Ryan S NettRoy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Jan E LeachDepartment of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO, 80523, USA.
Valérie VerdierIRD - Cirad - Univ Montpellier, UMR Interactions Plantes Microorganismes Environnement (IPME), Montpellier, 34399, France.
Marie-Anne Van SluysDepartamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, 05508-090, São Paulo, Brasil.
Reuben J PetersRoy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Iowa State University · USColorado State University · USUniversité de Montpellier · FR

Funding

Elucidating the elaboration of plant diterpenoid natural productsR01GM109773 · NIGMS · IOWA STATE UNIVERSITY · PI PETERS, REUBEN JOHN · 2015 to 2018
$1.1M
NIGMS NIH HHS R01 GM109773
6 · The paper itself

Abstract

Phytopathogens have developed elaborate mechanisms to attenuate the defense response of their host plants, including convergent evolution of complex pathways for production of the GA phytohormones, which were actually first isolated from the rice fungal pathogen Gibberella fujikuroi. The rice bacterial pathogen Xanthomonas oryzae pv. oryzicola (Xoc) has been demonstrated to contain a biosynthetic operon with cyclases capable of producing the universal GA precursor ent-kaurene. Genetic (knock-out) studies indicate that the derived diterpenoid serves as a virulence factor for this rice leaf streak pathogen, serving to reduce the jasmonic acid-mediated defense response. Here the functions of the remaining genes in the Xoc operon are elucidated and the distribution of the operon in X. oryzae is investigated in over 100 isolates. The Xoc operon leads to production of the bioactive GA

Indexed as

Biosynthetic PathwaysGeographyGibberellinsOperonOryzaPlant DiseasesPlant Growth RegulatorsPlant LeavesXanthomonasgibberellin A4GibberellinsPlant Growth Regulatorsbiogeographical distributioncytochromes P450gibberellin biosynthesisplant-microbe interactionsvirulence factor

Identifiers

PMID28134995
PMCPMC5388578
OpenAlexW2582601629

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.