Evidence map›Paper›PMID 28134784›Full record

ArticleGenes2017

Sibling sRNA RyfA1 Influences Shigella dysenteriae Pathogenesis.

Megan E Fris, William H Broach, Sarah E Klim, Peter W Coschigano, Ronan K Carroll, Clayton C Caswell, Erin R Murphy

Abstract read
In one paragraph

Article in Genes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. RNA Regulated Toxin-Antitoxin Systems in Pathogenic Bacteria.Frontiers in cellular and infection microbiology · 2021
    Review
  9. The Small ToxicmBio · 2020
    Article
  10. Article
  11. A Novel sRNA inFrontiers in cellular and infection microbiology · 2020
    Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Megan E FrisDepartment of Biological Sciences, Ohio University, 1 Ohio University Drive Athens, Athens, OH 45701, USA. mf590113@ohio.edu.
William H BroachOU Genomics Core Facility, Ohio University, 1 Ohio University Drive Athens, Athens, OH 45701, USA. broach@ohio.edu.
Sarah E KlimDepartment of Biological Sciences, Ohio University, 1 Ohio University Drive Athens, Athens, OH 45701, USA. sk231407@ohio.edu.
Peter W CoschiganoDepartment of Biomedical Sciences, Ohio University Heritage College of Osteopathic Medicine, 1 Ohio University Drive Athens, Athens, OH 45701, USA. coschiga@ohio.edu.
Ronan K CarrollDepartment of Biological Sciences, Ohio University, 1 Ohio University Drive Athens, Athens, OH 45701, USA. carrolr3@ohio.edu.
Clayton C CaswellDepartment of Biomedical Sciences and Pathobiology, Center for Molecular Medicine and Infectious Diseases, VA-MD College of Veterinary Medicine, Virginia Tech, 1410 Prices Fork Rd., Blacksburg, VA 24060, USA. caswellc@vt.edu.
Erin R MurphyDepartment of Biomedical Sciences, Ohio University Heritage College of Osteopathic Medicine, 1 Ohio University Drive Athens, Athens, OH 45701, USA. murphye@ohio.edu.

Funding

Form and Function of Tandem Duplicate Small RNA Molecules in Shigella dysenteriaeR15AI103887 · NIAID · OHIO UNIVERSITY ATHENS · PI MURPHY, ERIN R · 2013 to 2013
$446k
Analysis of a Shigella dysenteriae Fe regulated promoterF32GM069312 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI MURPHY, ERIN R · 2003 to 2005
$139k
NIAID NIH HHS R15 AI103887NIGMS NIH HHS F32 GM069312
6 · The paper itself

Abstract

Small regulatory RNAs (sRNAs) of Shigella dysenteriae and other pathogens are vital for the regulation of virulence-associated genes and processes. Here, we characterize RyfA1, one member of a sibling pair of sRNAs produced by S. dysenteriae. Unlike its nearly identical sibling molecule, RyfA2, predicted to be encoded almost exclusively by non-pathogenic species, the presence of a gene encoding RyfA1, or a RyfA1-like molecule, is strongly correlated with virulence in a variety of enteropathogens. In S. dysenteriae, the overproduction of RyfA1 negatively impacts the virulence-associated process of cell-to-cell spread as well as the expression of ompC, a gene encoding a major outer membrane protein important for the pathogenesis of Shigella. Interestingly, the production of RyfA1 is controlled by a second sRNA, here termed RyfB1, the first incidence of one regulatory small RNA controlling another in S. dysenteriae or any Shigella species.

Indexed as

OmpCpathogenesisriboregulatorsShigellasiblingsRNA

Identifiers

PMID28134784
PMCPMC5333039

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.