Evidence map›Paper›PMID 28134243›Full record

ArticleNature communications2017

Portal protein functions akin to a DNA-sensor that couples genome-packaging to icosahedral capsid maturation.

Ravi K Lokareddy, Rajeshwer S Sankhala, Ankoor Roy, Pavel V Afonine, Tina Motwani, Carolyn M Teschke, Kristin N Parent, Gino Cingolani

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. Review
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  8. Structural atlas ofbioRxiv : the preprint server for biology · 2025
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  12. Review
  13. Article
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  15. Article
  16. Integrative structural analysis ofResearch square · 2024
    Article
  17. Article
  18. Article
  19. Bacteriophage LDT325 enhancesFrontiers in microbiology · 2024
    Article
  20. Viral Genomic DNA Packaging Machinery.Sub-cellular biochemistry · 2024
    Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Ravi K LokareddyDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 233 South 10th Street, Philadelphia, Pennsylvania 19107, USA.
Rajeshwer S SankhalaDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 233 South 10th Street, Philadelphia, Pennsylvania 19107, USA.
Ankoor RoyDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 233 South 10th Street, Philadelphia, Pennsylvania 19107, USA.
Pavel V AfonineMolecular Biophysics &Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Tina MotwaniDepartment of Molecular and Cell Biology Department of Chemistry, University of Connecticut, 91N. Eagleville Road, Storrs, Connecticut 06269, USA.
Carolyn M TeschkeDepartment of Molecular and Cell Biology Department of Chemistry, University of Connecticut, 91N. Eagleville Road, Storrs, Connecticut 06269, USA.
Kristin N ParentDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, USA.
Gino CingolaniDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 233 South 10th Street, Philadelphia, Pennsylvania 19107, USA.
Thomas Jefferson University · USUniversity of Connecticut · USInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies · ITLawrence Berkeley National Laboratory · USMichigan State University · US

Funding

X-Ray Crystallography and Macromolecular CharacterizationP30CA056036 · NCI · THOMAS JEFFERSON UNIVERSITY · PI Andrew Chapman · 1995 to 2026
$94.8M
Understanding the Protein:Protein Interactions Required for Virus AssemblyR01GM076661 · NIGMS · UNIVERSITY OF CONNECTICUT STORRS · PI TESCHKE, CAROLYN M · 2007 to 2022
$7.2M
Multisubunit viral ATPases that couple ATP-hydrolysis to genome translocationR01GM100888 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI CINGOLANI, GINO · 2012 to 2020
$2.5M
A NEW HYBRID DIFFRACTOMETER FOR MACROMOLECULAR CRYSTALLOGRAPHY AND SAXS AT TJUS10OD017987 · OD · THOMAS JEFFERSON UNIVERSITY · PI CINGOLANI, GINO · 2014 to 2014
$600k
NCI NIH HHS P30 CA056036NIGMS NIH HHS R01 GM076661NIGMS NIH HHS R01 GM100888NIH HHS S10 OD017987
6 · The paper itself

Abstract

Tailed bacteriophages and herpesviruses assemble infectious particles via an empty precursor capsid (or 'procapsid') built by multiple copies of coat and scaffolding protein and by one dodecameric portal protein. Genome packaging triggers rearrangement of the coat protein and release of scaffolding protein, resulting in dramatic procapsid lattice expansion. Here, we provide structural evidence that the portal protein of the bacteriophage P22 exists in two distinct dodecameric conformations: an asymmetric assembly in the procapsid (PC-portal) that is competent for high affinity binding to the large terminase packaging protein, and a symmetric ring in the mature virion (MV-portal) that has negligible affinity for the packaging motor. Modelling studies indicate the structure of PC-portal is incompatible with DNA coaxially spooled around the portal vertex, suggesting that newly packaged DNA triggers the switch from PC- to MV-conformation. Thus, we propose the signal for termination of 'Headful Packaging' is a DNA-dependent symmetrization of portal protein.

Indexed as

Bacteriophage P22CapsidCapsid ProteinsCrystallography, X-RayDNA PackagingDNA, ViralEndodeoxyribonucleasesGenome, ViralMicroscopy, ElectronMolecular Docking SimulationProtein MultimerizationProtein Structure, QuaternaryVirus AssemblyCapsid ProteinsDNA, ViralEndodeoxyribonucleasesportal protein, bacteriophage P22terminase

Identifiers

PMID28134243
PMCPMC5290284
OpenAlexW2582282148

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.