Evidence map›Paper›PMID 28133760›Full record

ReviewBioEssays : news and reviews in molecular, cellular and developmental biology2017

Capitalizing on disaster: Establishing chromatin specificity behind the replication fork.

Srinivas Ramachandran, Kami Ahmad, Steven Henikoff

Open access · greenAbstract readReview
In one paragraph

Review in BioEssays : news and reviews in molecular, cellular and developmental biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Srinivas RamachandranDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Kami AhmadDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Steven HenikoffDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Fred Hutch Cancer Center · US

Funding

Genomic Functions of Nucleosome DynamicsR01GM098349 · NIGMS · HARVARD MEDICAL SCHOOL · PI AHMAD, KAMRAN · 2013 to 2016
$1.3M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM098349
6 · The paper itself

Abstract

Eukaryotic genomes are packaged into nucleosomal chromatin, and genomic activity requires the precise localization of transcription factors, histone modifications and nucleosomes. Classic work described the progressive reassembly and maturation of bulk chromatin behind replication forks. More recent proteomics has detailed the molecular machines that accompany the replicative polymerase to promote rapid histone deposition onto the newly replicated DNA. However, localized chromatin features are transiently obliterated by DNA replication every S phase of the cell cycle. Genomic strategies now observe the rebuilding of locus-specific chromatin features, and reveal surprising delays in transcription factor binding behind replication forks. This implies that transient chromatin disorganization during replication is a central juncture for targeted transcription factor binding within genomes. We propose that transient occlusion of regulatory elements by disorganized nucleosomes during chromatin maturation enforces specificity of factor binding.

Indexed as

DNA ReplicationEpigenesis, GeneticAnimalsCell CycleChromatinEukaryotaHumansTranscription FactorsChromatinTranscription Factorschromatinepigenetics

Identifiers

PMID28133760
PMCPMC5513704
OpenAlexW2580542156

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.