Evidence map›Paper›PMID 28132517›Full record

Observational studyAIDS research and human retroviruses2017

Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.

Wen Xie, Denis Agniel, Andrey Shevchenko, Sergey V Malov, Anton Svitin, Nikolay Cherkasov, Marianna K Baum, Adriana Campa, Simani Gaseitsiwe, Hermann Bussmann and 7 more

Abstract readObservational Study
In one paragraph

Observational study in AIDS research and human retroviruses, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Legacy of a magic gene-Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Genome-wide association study reveals genetic variants associated with HIV-1C infection in a Botswana study population.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 3 countries.

Wen Xie1 Harvard T.H. Chan School of Public Health AIDS Initiative, Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health , Boston, Massachusetts.
Denis Agniel3 Department of Biomedical Informatics, Harvard Medical School , Boston, Massachusetts.
Andrey Shevchenko4 Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University , St. Petersburg, Russia .
Sergey V Malov4 Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University , St. Petersburg, Russia .
Anton Svitin4 Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University , St. Petersburg, Russia .
Nikolay Cherkasov4 Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University , St. Petersburg, Russia .
Marianna K Baum6 Department of Dietetics and Nutrition, Robert Stempel College of Public Health & Social Work, Florida International University , Miami, Florida.
Adriana Campa6 Department of Dietetics and Nutrition, Robert Stempel College of Public Health & Social Work, Florida International University , Miami, Florida.
Simani Gaseitsiwe1 Harvard T.H. Chan School of Public Health AIDS Initiative, Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health , Boston, Massachusetts.
Hermann Bussmann1 Harvard T.H. Chan School of Public Health AIDS Initiative, Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health , Boston, Massachusetts.
Joseph Makhema1 Harvard T.H. Chan School of Public Health AIDS Initiative, Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health , Boston, Massachusetts.
Richard Marlink1 Harvard T.H. Chan School of Public Health AIDS Initiative, Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health , Boston, Massachusetts.
Vladimir Novitsky1 Harvard T.H. Chan School of Public Health AIDS Initiative, Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health , Boston, Massachusetts.
Tun-Hou Lee1 Harvard T.H. Chan School of Public Health AIDS Initiative, Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health , Boston, Massachusetts.
Tianxi Cai7 Department of Biostatistics, Harvard T.H. Chan School of Public Health , Boston, Massachusetts.
Stephen J O'Brien4 Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University , St. Petersburg, Russia .
M Essex1 Harvard T.H. Chan School of Public Health AIDS Initiative, Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health , Boston, Massachusetts.
Botswana Harvard AIDS Institute Partnership · BWSt Petersburg University · RUHarvard University · US

Funding

INTERNATIONAL TRAINING IN AIDS-RELATED EPIDEMIOLOGYD43TW000004 · FIC · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI ESSEX, MYRON E · 1988 to 2012
$13.4M
BIOSTATISTICS/EPIDEMIOLOGY TRAINING GRANTS IN AIDST32AI007358 · NIAID · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI Michael David Hughes · 1989 to 2026
$12.4M
GWAS on Determinants of HIV-1 Subtype C InfectionRC4AI092715 · NIAID · HARVARD SCHOOL OF PUBLIC HEALTH · PI ESSEX, MYRON E · 2010 to 2010
$6.2M
HIV Disease, Drug Abuse, &Nutrient Therapy in BotswanaR01DA016551 · NIDA · FLORIDA INTERNATIONAL UNIVERSITY · PI BAUM, MARIANNA K · 2003 to 2007
$3.8M
Cost-Effectiveness of HAART for HIV and AIDS in BotswanaR01AI052032 · NIAID · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI MARLINK, RICHARD GEORGE · 2003 to 2005
$1.4M
FIC NIH HHS D43 TW000004NIAID NIH HHS R01 AI052032NIAID NIH HHS RC4 AI092715NIAID NIH HHS T32 AI007358NIDA NIH HHS R01 DA016551
6 · The paper itself

Abstract

Sub-Saharan Africans infected with HIV-1C make up the largest AIDS patient population in the world and exhibit large heterogeneity in disease progression before initiating antiretroviral therapy. To identify host variants associated with HIV disease progression, we performed genome-wide association studies on a total of 556 treatment-naive HIV-infected individuals in Botswana. We characterized the pattern of HIV disease progression using a novel functional principal component analysis, which can better capture longitudinal CD4 and viral load (VL) trajectories. Two single-nucleotide polymorphisms (SNPs) near HCG22 (chr6, peak variant rs2535307, combined p = 3.72 × 10

Indexed as

Disease ProgressionGenetic Predisposition to DiseaseGenotypeAdultAgedAged, 80 and overBotswanaCD4 Lymphocyte CountFemaleGenome-Wide Association StudyHIV-1HIV InfectionsHumansMaleMiddle AgedPolymorphism, Single NucleotideHIV/AIDS pathogenesisHIV clinical outcomes researchHIV transmissionnatural hostsrestriction factors

Identifiers

PMID28132517
PMCPMC5467143
OpenAlexW2582914725

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.