Evidence map›Paper›PMID 28130426›Full record

ArticlePhysiological genomics2017

Genetic analysis of 10 pedigrees with inherited retinal degeneration by exome sequencing and phenotype-genotype association.

Pooja Biswas, Jacque L Duncan, Bruno Maranhao, Igor Kozak, Kari Branham, Luis Gabriel, Jonathan H Lin, Giulio Barteselli, Mili Navani, John Suk and 8 more

Open access · greenAbstract read
In one paragraph

Article in Physiological genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Trial
  2. Article
  3. Rod-sparing in a bardet-biedl syndrome patient with mutations in the ARL6 gene.Documenta ophthalmologica. Advances in ophthalmology · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Vertebrate Animal Models of RP59: Current Status and Future Prospects.International journal of molecular sciences · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Long-Term Follow-Up of Retinal Degenerations Associated WithTranslational vision science & technology · 2019
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Pooja BiswasShiley Eye Institute, University of California San Diego, La Jolla, California.
Jacque L DuncanOphthalmology, University of California San Francisco, San Francisco, California.
Bruno MaranhaoShiley Eye Institute, University of California San Diego, La Jolla, California.
Igor KozakKing Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia.
Kari BranhamOphthalmology & Visual Science, University of Michigan Kellogg Eye Center, Ann Arbor, Michigan.
Luis GabrielGenetics and Ophthalmology, Genelabor, Goiânia, Brazil.
Jonathan H LinShiley Eye Institute, University of California San Diego, La Jolla, California.
Giulio BarteselliShiley Eye Institute, University of California San Diego, La Jolla, California.
Mili NavaniShiley Eye Institute, University of California San Diego, La Jolla, California.
John SukShiley Eye Institute, University of California San Diego, La Jolla, California.
Michelle ParkeShiley Eye Institute, University of California San Diego, La Jolla, California.
Catherine SchlechterCasey Eye Institute, Oregon Health & Science University, Portland, Oregon; and.
Richard G WeleberCasey Eye Institute, Oregon Health & Science University, Portland, Oregon; and.
John R HeckenlivelyOphthalmology & Visual Science, University of Michigan Kellogg Eye Center, Ann Arbor, Michigan.
Gislin DagnelieDepartment of Ophthalmology, Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland.
Pauline LeeShiley Eye Institute, University of California San Diego, La Jolla, California.
S Amer RiazuddinDepartment of Ophthalmology, Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland.
Radha AyyagariShiley Eye Institute, University of California San Diego, La Jolla, California; rayyagari@ucsd.edu.
Smith-Kettlewell Eye Research Institute · USUniversity of California, San Diego · USJohns Hopkins University · USOregon Health & Science University · USUniversity of Michigan–Ann Arbor · USKing Khaled Eye Specialist Hospital · SAUniversity of California, San Francisco · US

Funding

Rapid-Prototyping and Design CoreP30EY002162 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LAKKARAJU, APARNA · 1985 to 2024
$16.8M
Vision BiostatisticsP30EY022589 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Derek Stuart Welsbie · 2012 to 2026
$10.3M
HEMOCHROMATOSIS--EPIDEMIOLOGY AND MOLECULAR MECHANISMSR01DK053505 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI LEE, PAULINE L · 1998 to 2010
$7.8M
Molecular Basis of Hereditary Retinal DegenerationsR01EY021237 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AYYAGARI, RADHA · 2011 to 2020
$5.6M
NEI NIH HHS P30 EY002162NEI NIH HHS P30 EY022589NEI NIH HHS R01 EY021237NIDDK NIH HHS R01 DK053505
6 · The paper itself

Abstract

Our purpose was to identify causative mutations and characterize the phenotype associated with the genotype in 10 unrelated families with autosomal recessive retinal degeneration. Ophthalmic evaluation and DNA isolation were carried out in 10 pedigrees with inherited retinal degenerations (IRD). Exomes of probands from eight pedigrees were captured using Nimblegen V2/V3 or Agilent V5+UTR kits, and sequencing was performed on Illumina HiSeq. The

Indexed as

GenotypePhenotypeADP-Ribosylation FactorsAlkyl and Aryl TransferasesATP-Binding Cassette Transporterscis-trans-IsomerasesDNA Mutational AnalysisExomeFemaleGenetic Association StudiesHumansMaleMutationPedigreePhosphotransferases (Alcohol Group Acceptor)Retinal DegenerationABCA4 protein, humanADP-Ribosylation FactorsAlkyl and Aryl TransferasesARL6 protein, humanATP-Binding Cassette Transportersceramide kinasecis-trans-Isomerasesdehydrodolichyl diphosphate synthetasePhosphotransferases (Alcohol Group Acceptor)Retinoid Isomerohydrolaseexome sequencinggeneticsIRDphenotype-genotyperetinal degeneration

Identifiers

PMID28130426
PMCPMC5407181
OpenAlexW2580098324

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.