ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2017
Integrated high-density consensus genetic map of Pyrus and anchoring of the 'Bartlett' v1.0 (Pyrus communis) genome.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- The genome sequence of the pear,Wellcome open research · 2024Article
- A self-compatible pear mutant derived from γ-irradiated pollen carries an 11-Mb duplication in chromosome 17.Frontiers in plant science · 2024Article
- Pear genetics: Recent advances, new prospects, and a roadmap for the future.Horticulture research · 2022Article
- Construction of a High-Density Genetic Map ofFrontiers in plant science · 2021Article
- Construction of high-density genetic maps defined sex determination region of the Y chromosome in spinach.Molecular genetics and genomics : MGG · 2021Article
- Homozygosity Mapping Reveals Population History and Trait Architecture in Self-Incompatible Pear (Frontiers in plant science · 2020Article
- An ultra-high-density genetic map provides insights into genome synteny, recombination landscape and taproot skin colour in radish (Raphanus sativus L.).Plant biotechnology journal · 2020Article
- Development of an integrated 200K SNP genotyping array and application for genetic mapping, genome assembly improvement and genome wide association studies in pear (Pyrus).Plant biotechnology journal · 2019Article
- Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization.BMC genomics · 2019Article
- Fine-mapping and validation of the genomic region underpinning pear red skin colour.Horticulture research · 2019Article
- Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri 'DangshanSuli' v1.0 genome.BMC genomics · 2018Article
- High-resolution genetic linkage map of European pear (Pyrus communis) and QTL fine-mapping of vegetative budbreak time.BMC plant biology · 2018Article
- Construction of a highly saturated linkage map in Japanese plum (Prunus salicina L.) using GBS for SNP marker calling.PloS one · 2018Article
- Article
- Genotyping-by-sequencing of pear (Horticulture research · 2017Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genetic maps are essential tools for pear genetics and genomics research. In this study, we first constructed an integrated simple sequence repeat (SSR) and single nucleotide polymorphism (SNP)-based consensus genetic map for pear based on common SSR markers between nine published maps. A total of 5,085 markers, including 1,232 SSRs and 3,853 SNPs, were localized on a consensus map spanning 3,266.0 cM in total, with an average marker interval of 0.64 cM, which represents the highest density consensus map of pear to date. Using three sets of high-density SNP-based genetic maps with European pear genetic backgrounds, we anchored a total of 291.5 Mb of the 'Bartlett' v1.0 (Pyrus communis L.) genome scaffolds into 17 pseudo-chromosomes. This accounted for 50.5% of the genome assembly, which was a great improvement on the 29.7% achieved originally. Intra-genome and inter-genome synteny analyses of the new 'Bartlett' v1.1 genome assembly with the Asian pear 'Dangshansuli' (Pyrus bretschneideri Rehd.) and apple (Malus × domestica Borkh.) genomes uncovered four new segmental duplication regions. The integrated high-density SSR and SNP-based consensus genetic map provided new insights into the genetic structure patterns of pear and assisted in the genome assembly of 'Bartlett' through further exploration of different pear genetic maps.
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