ArticleBioinformatics (Oxford, England)2017
LOCUST: a custom sequence locus typer for classifying microbial isolates.
Article in Bioinformatics (Oxford, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
11 citing papers in PubMed.
- Serum susceptibility of Escherichia coli and its association with patient clinical outcomes.PloS one · 2024Article
- BacWGSTdb 2.0: a one-stop repository for bacterial whole-genome sequence typing and source tracking.Nucleic acids research · 2021Article
- AbGRI4, a novel antibiotic resistance island in multiply antibiotic-resistant Acinetobacter baumannii clinical isolates.The Journal of antimicrobial chemotherapy · 2020Article
- Characterization of Pneumococcal Colonization Dynamics and Antimicrobial Resistance Using Shotgun Metagenomic Sequencing in Intensively Sampled South African Infants.Frontiers in public health · 2020Article
- Article
- Emergence of New Delhi Metallo-β-Lactamase (NDM-5) inmSphere · 2019Article
- Closed Genome Sequences of Clinical Neisseria gonorrhoeae Strains Obtained from Combined Oxford Nanopore and Illumina Sequencing.Microbiology resource announcements · 2019Article
- GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models.Bioinformatics (Oxford, England) · 2018Article
- MentaLiST - A fast MLST caller for large MLST schemes.Microbial genomics · 2018Article
- Automatic identification of optimal marker genes for phenotypic and taxonomic groups of microorganisms.PloS one · 2018Article
- Strain LevelFrontiers in microbiology · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
summaryLOCUST is a custom sequence locus typer tool for classifying microbial genomes. It provides a fully automated opportunity to customize the classification of genome-wide nucleotide variant data most relevant to biological research. AVAILABILITY AND IMPLEMENTATION: Source code, demo data, and detailed documentation are freely available at http://sourceforge.net/projects/locustyper . CONTACT: lbrinkac@jcvi.org. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.