Evidence map›Paper›PMID 28128353›Full record

ArticleScientific reports2017

Genotyping of human rhinovirus in adult patients with acute respiratory infections identified predominant infections of genotype A21.

Lili Ren, Donghong Yang, Xianwen Ren, Mingkun Li, Xinlin Mu, Qi Wang, Jie Cao, Ke Hu, Chunliang Yan, Hongwei Fan and 15 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it, 22 citations in OpenAlex.

  1. Vaccines for the common cold.The Cochrane database of systematic reviews · 2022
    Pooled it
  2. Vaccines for the common cold.The Cochrane database of systematic reviews · 2017
    Pooled it
  3. Review
  4. Article
  5. Article
  6. An outbreak of human Rhinovirus-A21 infection in a psychiatric ward during COVID-19 pandemic.Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi · 2022
    Article
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 11 institutions in 2 countries.

Lili RenMOH Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, IPB, CAMS-Fondation Mérieux, Institute of Pathogen Biology (IPB), Chinese Academy of Medical Sciences (CAMS) &Peking Union Medical College, Beijing 100730, P. R. China.
Donghong YangDepartment of Respiratory and Critical Care Medicine, Peking University People's Hospital, Beijing, 100044, P. R. China.
Xianwen RenMOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences &Peking Union Medical College, Beijing, 100176, P. R. China.
Mingkun LiFondation Mérieux, Lyon 69365, France.
Xinlin MuDepartment of Respiratory and Critical Care Medicine, Peking University People's Hospital, Beijing, 100044, P. R. China.
Qi WangDepartment of Respiratory Medicine, The Second Affiliated Hospital of Dalian Medical University, Dalian, 116027, P. R. China.
Jie CaoDepartment of Respiratory Medicine, Tianjin Medical University General Hospital, Tianjin 300052, P. R. China.
Ke HuDepartment of Respiratory Medicine, Renmin Hospital of Wuhan University, Wuhan, 430060, P. R. China.
Chunliang YanDepartment of Respiratory &Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, 100076, P. R. China.
Hongwei FanPeking Union Medical College Hospital, Chinese Academy of Medical Sciences &Peking Union Medical College, Beijing, 100730, P. R. China.
Xiangxin LiDepartment of Respiratory Medicine, Beijing Changping Hospital, Beijing, 102200, P. R. China.
Yusheng ChenDepartment of Respiratory Medicine, Fujian Provincial Hospital, Fuzhou, 350001, P. R. China.
Ruiqin WangDepartment of Respiratory Medicine, The First Affiliated Hospital of Tsinghua University, Beijing, 100016, P. R. China.
Fucheng AnDepartment of Respiratory Medicine, Mentougou District Hospital, Beijing, 102300, P. R. China.
Shuchang AnDepartment of Respiratory Medicine, The First Affiliated Hospital of Tsinghua University, Beijing, 100016, P. R. China.
Ming LuoBeijing Center for Disease Prevention and Control, No. 16, Hepingli Middle Avenue of Dongcheng district, Beijing, 100013, P. R. China.
Ying WangMOH Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, IPB, CAMS-Fondation Mérieux, Institute of Pathogen Biology (IPB), Chinese Academy of Medical Sciences (CAMS) &Peking Union Medical College, Beijing 100730, P. R. China.
Yan XiaoMOH Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, IPB, CAMS-Fondation Mérieux, Institute of Pathogen Biology (IPB), Chinese Academy of Medical Sciences (CAMS) &Peking Union Medical College, Beijing 100730, P. R. China.
Zichun XiangMOH Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, IPB, CAMS-Fondation Mérieux, Institute of Pathogen Biology (IPB), Chinese Academy of Medical Sciences (CAMS) &Peking Union Medical College, Beijing 100730, P. R. China.
Yan XiaoInstitute of Pathogen Biology, Chinese Academy of Medical Sciences &Peking Union Medical College, Beijing, 100176, P. R. China.
Li LiInstitute of Pathogen Biology, Chinese Academy of Medical Sciences &Peking Union Medical College, Beijing, 100176, P. R. China.
Fang HuangBeijing Center for Disease Prevention and Control, No. 16, Hepingli Middle Avenue of Dongcheng district, Beijing, 100013, P. R. China.
Qi JinMOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences &Peking Union Medical College, Beijing, 100176, P. R. China.
Zhancheng GaoDepartment of Respiratory and Critical Care Medicine, Peking University People's Hospital, Beijing, 100044, P. R. China.
Jianwei WangMOH Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, IPB, CAMS-Fondation Mérieux, Institute of Pathogen Biology (IPB), Chinese Academy of Medical Sciences (CAMS) &Peking Union Medical College, Beijing 100730, P. R. China.
Chinese Academy of Medical Sciences & Peking Union Medical College · CNPeking University · CNBeijing Center for Disease Prevention and Control · CNBeijing Hua Xin Hospital · CNBeijing Aerospace General Hospital · CNBeijing Chuiyangliu Hospital · CNFondation Mérieux · FRFujian Provincial Hospital · CNRenmin Hospital of Wuhan University · CNSecond Affiliated Hospital of Dalian Medical University · CNTianjin Medical University General Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human rhinovirus (HRV) is an important causative agent of acute respiratory tract infections (ARTIs). The roles of specific HRV genotypes in patients suffering from ARTIs have not been well established. We recruited 147 adult inpatients with community-acquired pneumonia (CAP) and 291 adult outpatients with upper ARTIs (URTIs). Respiratory pathogens were screened via PCR assays. HRV was detected in 42 patients, with 35 species A, five B and two C. Seventeen genotypes were identified, and HRV-A21 ranked the highest (9/42, 21.4%). The HRV-A21-positive infections were detected in four patients with CAP and in five with URTIs, all without co-infections. The HRV-A21 genome sequenced in this study contained 12 novel coding polymorphisms in viral protein (VP) 1, VP2 EF loop, VP3 knob and 3D regions. The infections of HRV-A21 virus obtained in this study could not be neutralized by antiserum of HRV-A21 prototype strain (VR-1131), indicating remarkable antigenic variation. Metagenomic analysis showed the HRV-A21 reads were dominant in bronchoalveolar lavage fluid of the three HRV-A21-positive patients with severe CAP, in which two dead. Our results highlight an unexpected infection of genotype HRV-A21 in the clinic, indicating the necessity of precise genotyping and surveillance of HRVs to improve the clinical management of ARTIs.

Indexed as

GenotypeAcute DiseaseAdultAgedAmino Acid SubstitutionCapsid ProteinsCommon ColdFemaleHumansMaleMetagenomicsMiddle AgedNeutralization TestsPhylogenyPicornaviridae InfectionsPolymorphism, GeneticCapsid Proteins

Identifiers

PMID28128353
PMCPMC5269714
OpenAlexW2581362378

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.