Evidence map›Paper›PMID 28128346›Full record

ArticleNature communications2017

A Lin28 homologue reprograms differentiated cells to stem cells in the moss Physcomitrella patens.

Chen Li, Yusuke Sako, Akihiro Imai, Tomoaki Nishiyama, Kari Thompson, Minoru Kubo, Yuji Hiwatashi, Yukiko Kabeya, Dale Karlson, Shu-Hsing Wu and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
13.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
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  6. Review
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  8. Review
  9. Review
  10. Interpreting machine learning models to investigate circadian regulation and facilitate exploration of clock function.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Review
  12. Article
  13. Article
  14. The MossThe Plant cell · 2020
    Review
  15. Article
  16. Heterologous expression ofPlant diversity · 2019
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Chen LiNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.
Yusuke SakoNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.
Akihiro ImaiNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.
Tomoaki NishiyamaERATO, Hasebe Reprogramming Evolution Project, Japan Science and Technology Agency, Okazaki 444-8585, Japan.ORCID 0000-0003-1279-7806
Kari ThompsonNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.
Minoru KuboNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.
Yuji HiwatashiNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.ORCID 0000-0002-3996-0549
Yukiko KabeyaNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.
Dale KarlsonDivision of Plant and Soil Sciences, West Virginia University, Morgantown, West Virginia 26506, USA.
Shu-Hsing WuInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan.ORCID 0000-0002-7179-3138
Masaki IshikawaNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.
Takashi MurataNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.
Philip N BenfeyDepartment of Biology and Howard Hughes Medical Institute, Duke University, Durham, North Carolina 27708, USA.
Yoshikatsu SatoNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.
Yosuke TamadaNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.ORCID 0000-0002-4845-4867
Mitsuyasu HasebeNational Institute for Basic Biology, Division of Evolutionary Biology, Okazaki 444-8585, Japan.
National Institute for Basic Biology · JPWest Virginia University · USHoward Hughes Medical Institute · USInstitute of Plant and Microbial Biology, Academia Sinica · TWKanazawa University · JP

Funding

MOLECULAR GENETIC ANALYSIS OF ROOT MORPHOGENESISR01GM043778 · NIGMS · ROCKEFELLER UNIVERSITY · PI BENFEY, PHILIP N · 1991 to 2017
$5.4M
NIGMS NIH HHS R01 GM043778
6 · The paper itself

Abstract

Both land plants and metazoa have the capacity to reprogram differentiated cells to stem cells. Here we show that the moss Physcomitrella patens Cold-Shock Domain Protein 1 (PpCSP1) regulates reprogramming of differentiated leaf cells to chloronema apical stem cells and shares conserved domains with the induced pluripotent stem cell factor Lin28 in mammals. PpCSP1 accumulates in the reprogramming cells and is maintained throughout the reprogramming process and in the resultant stem cells. Expression of PpCSP1 is negatively regulated by its 3'-untranslated region (3'-UTR). Removal of the 3'-UTR stabilizes PpCSP1 transcripts, results in accumulation of PpCSP1 protein and enhances reprogramming. A quadruple deletion mutant of PpCSP1 and three closely related PpCSP genes exhibits attenuated reprogramming indicating that the PpCSP genes function redundantly in cellular reprogramming. Taken together, these data demonstrate a positive role of PpCSP1 in reprogramming, which is similar to the function of mammalian Lin28.

Indexed as

3' Untranslated RegionsBryopsidaCell DifferentiationCellular ReprogrammingCold Shock Proteins and PeptidesGene Expression Regulation, PlantPlant LeavesPlant ProteinsPlants, Genetically ModifiedProtein DomainsStem Cells3' Untranslated RegionsCold Shock Proteins and PeptidesPlant Proteins

Identifiers

PMID28128346
PMCPMC5290140
OpenAlexW2581651901

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.