Evidence map›Paper›PMID 28128343›Full record

ArticleScientific reports2017

RNA sequencing of synaptic and cytoplasmic Upf1-bound transcripts supports contribution of nonsense-mediated decay to epileptogenesis.

Claire M Mooney, Eva M Jimenez-Mateos, Tobias Engel, Catherine Mooney, Mairead Diviney, Morten T Venø, Jørgen Kjems, Michael A Farrell, Donncha F O'Brien, Norman Delanty and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

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  8. Poison exons in neurodevelopment and disease.Current opinion in genetics & development · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Claire M MooneyDepartment of Physiology &Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland.
Eva M Jimenez-MateosDepartment of Physiology &Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland.
Tobias EngelDepartment of Physiology &Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland.
Catherine MooneyDepartment of Physiology &Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland.
Mairead DivineyDepartment of Physiology &Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland.
Morten T VenøDepartment of Molecular Biology and Genetics and Center for DNA Nanotechnology and Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Aarhus C, Denmark.
Jørgen KjemsDepartment of Molecular Biology and Genetics and Center for DNA Nanotechnology and Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Aarhus C, Denmark.
Michael A FarrellBeaumont hospital, Beaumont, Dublin, Ireland.
Donncha F O'BrienBeaumont hospital, Beaumont, Dublin, Ireland.
Norman DelantyBeaumont hospital, Beaumont, Dublin, Ireland.
David C HenshallDepartment of Physiology &Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland.
Royal College of Surgeons in Ireland · IEBeaumont Hospital · IEAarhus University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nonsense mediated decay (NMD) pathway is a critical surveillance mechanism for identifying aberrant mRNA transcripts. It is unknown, however, whether the NMD system is affected by seizures in vivo and whether changes confer beneficial or maladaptive responses that influence long-term outcomes such the network alterations that produce spontaneous recurrent seizures. Here we explored the responses of the NMD pathway to prolonged seizures (status epilepticus) and investigated the effects of NMD inhibition on epilepsy in mice. Status epilepticus led to increased protein levels of Up-frameshift suppressor 1 homolog (Upf1) within the mouse hippocampus. Upf1 protein levels were also higher in resected hippocampus from patients with intractable temporal lobe epilepsy. Immunoprecipitation of Upf1-bound RNA from the cytoplasmic and synaptosomal compartments followed by RNA sequencing identified unique populations of NMD-associated transcripts and altered levels after status epilepticus, including known substrates such as Arc as well as novel targets including Inhba and Npas4. Finally, long-term video-EEG recordings determined that pharmacologic interference in the NMD pathway after status epilepticus reduced the later occurrence of spontaneous seizures in mice. These findings suggest compartment-specific recruitment and differential loading of transcripts by NMD pathway components may contribute to the process of epileptogenesis.

Indexed as

Sequence Analysis, RNAAnimalsComputational BiologyCytoplasmEpilepsyEpilepsy, Temporal LobeHippocampusHumansImmunoprecipitationMaleMice, Inbred C57BLNonsense Mediated mRNA DecayProtein BindingReproducibility of ResultsRNA HelicasesRNA, MessengerRent1 protein, mouseRNA HelicasesRNA, MessengerSmall Molecule LibrariesTrans-ActivatorsUPF1 protein, human

Identifiers

PMID28128343
PMCPMC5269742
OpenAlexW2582891510

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.