Evidence map›Paper›PMID 28127814›Full record

ArticleProtein science : a publication of the Protein Society2017

Transport capabilities of environmental Pseudomonads for sulfur compounds.

Sarah Zerbs, Peter J Korajczyk, Philippe H Noirot, Frank R Collart

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Modeling themSystems
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sarah ZerbsBiosciences Division, Argonne National Laboratory, 9700 S Cass Ave, Lemont, Illinois, 60439.
Peter J KorajczykBiosciences Division, Argonne National Laboratory, 9700 S Cass Ave, Lemont, Illinois, 60439.
Philippe H NoirotBiosciences Division, Argonne National Laboratory, 9700 S Cass Ave, Lemont, Illinois, 60439.
Frank R CollartBiosciences Division, Argonne National Laboratory, 9700 S Cass Ave, Lemont, Illinois, 60439.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sulfur is an essential element in plant rhizospheres and microbial activity plays a key role in increasing the biological availability of sulfur in soil environments. To better understand the mechanisms facilitating the exchange of sulfur-containing molecules in soil, we profiled the binding specificities of eight previously uncharacterized ABC transporter solute-binding proteins from plant-associated Pseudomonads. A high-throughput screening procedure indicated eighteen significant organosulfur binding ligands, with at least one high-quality screening hit for each protein target. Calorimetric and spectroscopic methods were used to validate the best ligand assignments and catalog the thermodynamic properties of the protein-ligand interactions. Two novel high-affinity ligand-binding activities were identified and quantified in this set of solute-binding proteins. Bacteria were cultured in minimal media with screening library components supplied as the sole sulfur sources, demonstrating that these organosulfur compounds can be metabolized and confirming the relevance of ligand assignments. These results expand the set of experimentally validated ligands amenable to transport by this ABC transporter family and demonstrate the complex range of protein-ligand interactions that can be accomplished by solute-binding proteins. Characterizing new nutrient import pathways provides insight into Pseudomonad metabolic capabilities which can be used to further interrogate bacterial survival and participation in soil and rhizosphere communities.

Indexed as

ATP-Binding Cassette TransportersBacterial ProteinsBiological Transport, ActivePseudomonasSulfur CompoundsATP-Binding Cassette TransportersBacterial ProteinsSulfur CompoundsABC transporterorganosulfur compoundsPseudomonas fluorescensPseudomonas protegensrhizosphere

Identifiers

PMID28127814
PMCPMC5368066

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.