ArticleStandards in genomic sciences2017
Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture.
Article in Standards in genomic sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
31 citing papers in PubMed, 71 citations in OpenAlex.
- Genomic insights into the taxonomy, safety and biotechnological potential ofMicrobial genomics · 2026Article
- Reference-guided assembly of metagenomes with MetaCompass.Cell reports methods · 2025Article
- Whole-genome analysis ofMicrobiology spectrum · 2025Article
- Phylogenomic and Pangenomic Assessment of a Mediterranean Strain of Raphidiopsis raciborskii Extends Knowledge of the Global Distribution and Characteristics of a Potentially Toxigenic Cyanobacterium.Environmental microbiology reports · 2025Article
- A consensus protocol for the recovery of mercury methylation genes from metagenomes.Molecular ecology resources · 2023Article
- Comparison of Metagenomics and Metatranscriptomics Tools: A Guide to Making the Right Choice.Genes · 2022Article
- High molecular weight DNA extraction strategies for long-read sequencing of complex metagenomes.Molecular ecology resources · 2022Article
- Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation.Microbiome · 2022Article
- Disentangle genus microdiversity within a complex microbial community by using a multi-distance long-read binning method: example of Candidatus Accumulibacter.Environmental microbiology · 2022Article
- Species composition and overall diversity are significantly correlated between the tongue coating and gastric fluid microbiomes in gastritis patients.BMC medical genomics · 2022Article
- High-Resolution Metagenomics of Human Gut Microbiota Generated by Nanopore and Illumina Hybrid Metagenome Assembly.Frontiers in microbiology · 2022Article
- Recovery of complete genomes and non-chromosomal replicons from activated sludge enrichment microbial communities with long read metagenome sequencing.NPJ biofilms and microbiomes · 2021Article
- Article
- Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes.Scientific reports · 2021Article
- Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN).PLoS computational biology · 2021Article
- Current challenges and best-practice protocols for microbiome analysis.Briefings in bioinformatics · 2021Review
- Comparative Analysis of 16S rRNA Gene and Metagenome Sequencing in Pediatric Gut Microbiomes.Frontiers in microbiology · 2021Article
- metaFlye: scalable long-read metagenome assembly using repeat graphs.Nature methods · 2020Article
- MetaEuk-sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics.Microbiome · 2020Article
- Accurate and complete genomes from metagenomes.Genome research · 2020Review
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Here we report three complete bacterial genome assemblies from a PacBio shotgun metagenome of a co-culture from Upper Klamath Lake, OR. Genome annotations and culture conditions indicate these bacteria are dependent on carbon and nitrogen fixation from the cyanobacterium
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.