Evidence map›Paper›PMID 28127056›Full record

ArticleScientific reports2017

Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Ambystoma mexicanum.

M Ryan Woodcock, Jennifer Vaughn-Wolfe, Alexandra Elias, D Kevin Kump, Katharina Denise Kendall, Nataliya Timoshevskaya, Vladimir Timoshevskiy, Dustin W Perry, Jeramiah J Smith, Jessica E Spiewak and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Science advances · 2024
    Article
  5. Article
  6. Article
  7. Genes · 2023
    Article
  8. Article
  9. The use of transgenics in the laboratory axolotl.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Review
  10. The amazing and anomalous axolotls as scientific models.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
  11. Gene and transgenics nomenclature for the laboratory axolotl-Ambystoma mexicanum.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
  12. Review
  13. Article
  14. Large-scale variation in single nucleotide polymorphism density within the laboratory axolotl (Ambystoma mexicanum).Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  15. Toward whole tissue imaging of axolotl regeneration.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Review
  16. The rax homeobox gene is mutated in the eyeless axolotl, Ambystoma mexicanum.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  17. The giant axolotl genome uncovers the evolution, scaling, and transcriptional control of complex gene loci.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. Article
  19. Towards comparative analyses of salamander limb regeneration.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

M Ryan WoodcockDepartment of Biology, University of Kentucky, Lexington, KY, 40506, USA.
Jennifer Vaughn-WolfeDepartment of Biology, University of Kentucky, Lexington, KY, 40506, USA.
Alexandra EliasLafayette High School, Lexington, KY, 40503, USA.
D Kevin KumpDepartment of Biology, University of Kentucky, Lexington, KY, 40506, USA.
Katharina Denise KendallDepartment of Biology, University of Kentucky, Lexington, KY, 40506, USA.
Nataliya TimoshevskayaDepartment of Biology, University of Kentucky, Lexington, KY, 40506, USA.
Vladimir TimoshevskiyDepartment of Biology, University of Kentucky, Lexington, KY, 40506, USA.
Dustin W PerryTransposagen Biopharmaceuticals, 535 W 2nd Suite l0, Lexington, KY, 40508, USA.
Jeramiah J SmithDepartment of Biology, University of Kentucky, Lexington, KY, 40506, USA.
Jessica E SpiewakDepartment of Biology, University of Washington, Seattle, WA, 98195, USA.
David M ParichyDepartment of Biology, University of Washington, Seattle, WA, 98195, USA.
S Randal VossDepartment of Biology, University of Kentucky, Lexington, KY, 40506, USA. srvoss@uky.edu.
University of Kentucky · USUniversity of Washington · USLafayette School Corporation · USTransposagen Biopharmaceuticals (United States) · US

Funding

TRAINING PROGRAM IN CELLULAR AND MOLECULAR BIOLOGYT32GM007067 · NIGMS · WASHINGTON UNIVERSITY · PI TRUE-KROB, HEATHER L · 1985 to 2020
$20.4M
Fish facility enhancementR35GM122471 · NIGMS · UNIVERSITY OF WASHINGTON · PI DAVID M PARICHY · 2017 to 2026
$6.4M
Ambystoma Genetic Stock Center - Revision to Include Curation and Informatics ComponentP40OD019794 · OD · UNIVERSITY OF KENTUCKY · PI Stephen Randal Voss · 2015 to 2026
$6.3M
Research Resources for Model AmphibiansR24OD010435 · OD · UNIVERSITY OF KENTUCKY · PI SMITH, JERAMIAH JAMES, VOSS, STEPHEN RANDAL · 2012 to 2025
$5.7M
DEVELOPMENTAL BASES FOR PIGMENT CELL VARIATION IN DANIOR01GM062182 · NIGMS · UNIVERSITY OF WASHINGTON · PI PARICHY, DAVID M · 2001 to 2014
$3.8M
Melanocyte boundary interactions in development and neoplasiaR01GM096906 · NIGMS · UNIVERSITY OF WASHINGTON · PI PARICHY, DAVID M · 2011 to 2016
$2.2M
NIGMS NIH HHS R01 GM062182NIGMS NIH HHS R01 GM096906NIGMS NIH HHS R35 GM122471NIGMS NIH HHS T32 GM007067NIH HHS P40 OD019794NIH HHS R24 OD010435
6 · The paper itself

Abstract

The molecular genetic toolkit of the Mexican axolotl, a classic model organism, has matured to the point where it is now possible to identify genes for mutant phenotypes. We used a positional cloning-candidate gene approach to identify molecular bases for two historic axolotl pigment phenotypes: white and albino. White (d/d) mutants have defects in pigment cell morphogenesis and differentiation, whereas albino (a/a) mutants lack melanin. We identified in white mutants a transcriptional defect in endothelin 3 (edn3), encoding a peptide factor that promotes pigment cell migration and differentiation in other vertebrates. Transgenic restoration of Edn3 expression rescued the homozygous white mutant phenotype. We mapped the albino locus to tyrosinase (tyr) and identified polymorphisms shared between the albino allele (tyr

Indexed as

Biological Variation, PopulationGenotypeAmbystoma mexicanumAnimalsBiological EvolutionDNAPigments, BiologicalDNAPigments, Biological

Identifiers

PMID28127056
PMCPMC5428337
OpenAlexW2582032993

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.