Evidence map›Paper›PMID 28125665›Full record

ArticlePloS one2017

Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis.

Yurong Fu, Xianqin Xu, Junfang Xue, Wenping Duan, Zhengjun Yi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Review
  3. Long non-coding RNA transcripts inNon-coding RNA research · 2025
    Review
  4. Review
  5. Unveiling the Hidden Regulators: The Impact of lncRNAs on Zoonoses.International journal of molecular sciences · 2024
    Review
  6. Review
  7. Article
  8. BothPathogens (Basel, Switzerland) · 2022
    Article
  9. Article
  10. Review
  11. Review
  12. The Roles of Host Noncoding RNAs inFrontiers in immunology · 2021
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Clinical relevance ofOncotarget · 2017
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yurong FuDepartment of Medical Microbiology of Clinical Medicine College, Weifang Medical University, Shandong, Weifang, China.
Xianqin XuDepartment of Clinical Skill Laboratory of Clinical Medicine College, Weifang Medical University, Shandong, Weifang, China.
Junfang XueDepartment of Surgery of Gaomi City people's Hospital, Shandong, Weifang, China.
Wenping DuanDepartment of Nursing of Affiliated Hospital of Weifang Medical University, Shandong, Weifang, China.
Zhengjun YiDepartment of Laboratory Medicine, Key Laboratory of Clinical Laboratory Diagnostics in Universities of Shandong, Weifang Medical University, Shandong, Weifang, China.
Weifang Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Role of lncRNAs in human adaptive immune response to TB infection is largely unexplored. To address this issue, here we characterized lncRNA expression profile in primary human B cell response to TB infection using microarray assay. Several lncRNAs and mRNAs were chosen for RT-qPCR validation. Bioinformatics prediction was applied to delineate function of the deregulated mRNAs. We found that 844 lncRNAs and 597 mRNAs were differentially expressed between B cell samples from individuals with or without TB. KEGG pathway analysis for the deregulated mRNAs indicated a number of pathways, such as TB, TLR signaling pathway and antigen processing and presentation. Moreover, corresponding to the dysregulation of many lncRNAs, we also found that their adjacent protein-coding genes were also deregulated. Functional annotation for the corresponding mRNAs showed that these lncRNAs were mainly associated with TLR signaling, TGF-β signaling. Interestingly, SOCS3, which is a critical negative regulator of cytokine response to TB infection and its nearby lncRNA XLOC_012582, were highly expressed in active TB B cells. Subsequent RT-qPCR results confirmed the changes. Whether upregulated XLOC_012582 causes SOCS3 overexpression and is eventually involved in the context of exacerbations of active TB represents an interesting issue that deserves to be further explored. Taken together, for the first time, we identified a set of deregulated lncRNAs in active TB B cells and their functions were predicted. Such findings provided novel insight into the pathogenesis of TB and further studies should focus on the function and pathogenic mechanisms of the lncRNAs involved in active TB.

Indexed as

Adaptive ImmunityAdultAntigen PresentationB-LymphocytesCase-Control StudiesComputational BiologyFemaleGene Expression ProfilingGene Expression RegulationGene OntologyHumansMaleMicroarray AnalysisMiddle AgedMolecular Sequence AnnotationMycobacterium tuberculosisRNA, Long NoncodingRNA, MessengerSOCS3 protein, humanSuppressor of Cytokine Signaling 3 ProteinToll-Like ReceptorsTransforming Growth Factor beta

Identifiers

PMID28125665
PMCPMC5268381
OpenAlexW2580699250

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.