Evidence map›Paper›PMID 28125606›Full record

ArticlePloS one2017

Crystal Structure and Functional Characterization of an Esterase (EaEST) from Exiguobacterium antarcticum.

Chang Woo Lee, Sena Kwon, Sun-Ha Park, Boo-Young Kim, Wanki Yoo, Bum Han Ryu, Han-Woo Kim, Seung Chul Shin, Sunghwan Kim, Hyun Park and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

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  10. Xerotolerance: A New Property inMicroorganisms · 2021
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  12. Article
  13. Characterization and Immobilization of a Novel SGNH Family Esterase (International journal of molecular sciences · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Chang Woo LeeUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Sena KwonDepartment of Chemistry, College of Natural Science, Sookmyung Women's University, Seoul, Korea.
Sun-Ha ParkUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Boo-Young KimDepartment of Chemistry, College of Natural Science, Sookmyung Women's University, Seoul, Korea.
Wanki YooDepartment of Chemistry, College of Natural Science, Sookmyung Women's University, Seoul, Korea.
Bum Han RyuDepartment of Chemistry, College of Natural Science, Sookmyung Women's University, Seoul, Korea.
Han-Woo KimUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Seung Chul ShinUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Sunghwan KimNew Drug Development Center, Daegu-Gyeongpuk Medical Innovation Foundation, Daegu, Republic of Korea.
Hyun ParkUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
T Doohun KimDepartment of Chemistry, College of Natural Science, Sookmyung Women's University, Seoul, Korea.
Jun Hyuck LeeUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Sookmyung Women's University · KRKorea Polar Research Institute · KRKorea University of Science and Technology · KRDaegu-Gyeongbuk Medical Innovation Foundation · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel microbial esterase, EaEST, from a psychrophilic bacterium Exiguobacterium antarcticum B7, was identified and characterized. To our knowledge, this is the first report describing structural analysis and biochemical characterization of an esterase isolated from the genus Exiguobacterium. Crystal structure of EaEST, determined at a resolution of 1.9 Å, showed that the enzyme has a canonical α/β hydrolase fold with an α-helical cap domain and a catalytic triad consisting of Ser96, Asp220, and His248. Interestingly, the active site of the structure of EaEST is occupied by a peracetate molecule, which is the product of perhydrolysis of acetate. This result suggests that EaEST may have perhydrolase activity. The activity assay showed that EaEST has significant perhydrolase and esterase activity with respect to short-chain p-nitrophenyl esters (≤C8), naphthyl derivatives, phenyl acetate, and glyceryl tributyrate. However, the S96A single mutant had low esterase and perhydrolase activity. Moreover, the L27A mutant showed low levels of protein expression and solubility as well as preference for different substrates. On conducting an enantioselectivity analysis using R- and S-methyl-3-hydroxy-2-methylpropionate, a preference for R-enantiomers was observed. Surprisingly, immobilized EaEST was found to not only retain 200% of its initial activity after incubation for 1 h at 80°C, but also retained more than 60% of its initial activity after 20 cycles of reutilization. This research will serve as basis for future engineering of this esterase for biotechnological and industrial applications.

Indexed as

Amino Acid SequenceBacillaceaeBacterial ProteinsBiocatalysisCatalytic DomainCloning, MolecularCrystallography, X-RayEnzymes, ImmobilizedEnzyme StabilityEscherichia coliEsterasesGene ExpressionHot TemperatureKineticsModels, MolecularMutationBacterial ProteinsEnzymes, ImmobilizedEsterasesNitrophenolsPeracetic AcidRecombinant Proteins

Identifiers

PMID28125606
PMCPMC5268438
OpenAlexW2580635191

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.