Evidence map›Paper›PMID 28124624›Full record

ReviewBMC cell biology2017

Accessing gap-junction channel structure-function relationships through molecular modeling and simulations.

F Villanelo, Y Escalona, C Pareja-Barrueto, J A Garate, I M Skerrett, T Perez-Acle

Abstract readReview
In one paragraph

Review in BMC cell biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Inhibition of connexin hemichannels alleviates neuroinflammation and hyperexcitability in temporal lobe epilepsy.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Cues to Opening Mechanisms FromFrontiers in molecular neuroscience · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

F VillaneloComputational Biology Lab. Fundación Ciencia & Vida, Santiago, Chile.
Y EscalonaComputational Biology Lab. Fundación Ciencia & Vida, Santiago, Chile.
C Pareja-BarruetoComputational Biology Lab. Fundación Ciencia & Vida, Santiago, Chile.
J A GarateComputational Biology Lab. Fundación Ciencia & Vida, Santiago, Chile.
I M SkerrettState University of New York (SUNY) Buffalo State, Buffalo, NY, 14222, USA.
T Perez-AcleComputational Biology Lab. Fundación Ciencia & Vida, Santiago, Chile. tomas@dlab.cl.

Funding

Investigating Connexion Interactions in SkinR15GM116089 · NIGMS · RESEARCH FOUNDATION OF SUNY AT BUFFALO STATE COLLEGE · PI SKERRETT, INGRID MARTHA · 2015 to 2015
$294k
NIGMS NIH HHS R15 GM116089
6 · The paper itself

Abstract

backgroundGap junction channels (GJCs) are massive protein channels connecting the cytoplasm of adjacent cells. These channels allow intercellular transfer of molecules up to ~1 kDa, including water, ions and other metabolites. Unveiling structure-function relationships coded into the molecular architecture of these channels is necessary to gain insight on their vast biological function including electrical synapse, inflammation, development and tissular homeostasis. From early works, computational methods have been critical to analyze and interpret experimental observations. Upon the availability of crystallographic structures, molecular modeling and simulations have become a valuable tool to assess structure-function relationships in GJCs. Modeling different connexin isoforms, simulating the transport process, and exploring molecular variants, have provided new hypotheses and out-of-the-box approaches to the study of these important channels.

methodsHere, we review foundational structural studies and recent developments on GJCs using molecular modeling and simulation techniques, highlighting the methods and the cross-talk with experimental evidence. RESULTS AND DISCUSSION: By comparing results obtained by molecular modeling and simulations techniques with structural and functional information obtained from both recent literature and structural databases, we provide a critical assesment of structure-function relationships that can be obtained from the junction between theoretical and experimental evidence.

Indexed as

Computer SimulationModels, MolecularAnimalsBinding SitesCalciumGap JunctionsHumansStructure-Activity RelationshipCalciumConnexinsGap-junction channelsHemichannelsHomology modelingMolecular simulationStructure and function

Identifiers

PMID28124624
PMCPMC5267332

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.