Evidence map›Paper›PMID 28124210›Full record

ArticleRice (New York, N.Y.)2017

A temporal and spatial contribution of asparaginase to asparagine catabolism during development of rice grains.

Yui Yabuki, Miwa Ohashi, Fumi Imagawa, Keiki Ishiyama, Marcel Pascal Beier, Noriyuki Konishi, Toshiko Umetsu-Ohashi, Toshihiko Hayakawa, Tomoyuki Yamaya, Soichi Kojima

Open access · goldAbstract read
In one paragraph

Article in Rice (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
8.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Breaking the association between gametocidal gene(s) and leaf rust resistance gene (Molecular breeding : new strategies in plant improvement · 2024
    Article
  5. Coregulation ofFrontiers in plant science · 2023
    Article
  6. Review
  7. New Insight into Aspartate Metabolic Pathways inInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Yui YabukiGraduate School of Agricultural Science, Tohoku University, 468-1 Aoba, Aramaki, Sendai, 9800845, Japan.
Miwa OhashiGraduate School of Agricultural Science, Tohoku University, 468-1 Aoba, Aramaki, Sendai, 9800845, Japan.
Fumi ImagawaGraduate School of Agricultural Science, Tohoku University, 468-1 Aoba, Aramaki, Sendai, 9800845, Japan.
Keiki IshiyamaGraduate School of Agricultural Science, Tohoku University, 468-1 Aoba, Aramaki, Sendai, 9800845, Japan.
Marcel Pascal BeierGraduate School of Agricultural Science, Tohoku University, 468-1 Aoba, Aramaki, Sendai, 9800845, Japan.
Noriyuki KonishiGraduate School of Agricultural Science, Tohoku University, 468-1 Aoba, Aramaki, Sendai, 9800845, Japan.
Toshiko Umetsu-OhashiGraduate School of Agricultural Science, Tohoku University, 468-1 Aoba, Aramaki, Sendai, 9800845, Japan.
Toshihiko HayakawaGraduate School of Agricultural Science, Tohoku University, 468-1 Aoba, Aramaki, Sendai, 9800845, Japan.
Tomoyuki YamayaGraduate School of Agricultural Science, Tohoku University, 468-1 Aoba, Aramaki, Sendai, 9800845, Japan.
Soichi KojimaGraduate School of Agricultural Science, Tohoku University, 468-1 Aoba, Aramaki, Sendai, 9800845, Japan. soichi.kojima.a2@tohoku.ac.jp.ORCID http://orcid.org/0000-0002-4260-8394
Tohoku University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAsparagine is one of the most dominant organic nitrogen compounds in phloem and xylem sap in a wide range of plant species. Asparaginase (ASNase; EC, 3.5.1.1) catabolizes asparagine into aspartate and ammonium; therefore, it is suggested to play a key role in asparagine metabolism within legume sink organs. However, the metabolic fate of asparagine in source and sink organs during rice seed production remains to be elucidated. Therefore, the main objective of this study is to investigate the asparagine metabolism in a temporal and spatial manner during rice seed production.

resultsFor this purpose, the expression of genes involved in asparagine catabolism, such as asparaginase1 (OsASNase1) and 2 (OsASNase2), were quantitatively measured, and contents of asparagine, aspartate and ammonium ions were determined in sink and source organs during spikelet ripening. Quantitative real-time PCR and in situ localization studies determined that OsASNase2 is expressed in the dorsal vascular bundles and nucellar projection of developing grains, as well as in mesophyll and phloem companion cells of senescent flag leaves. Amino acid measurements revealed that the aspartate concentration is higher than asparagine in both source and sink organs.

conclusionThis work suggests that asparaginase dependent asparagine catabolism occurred not only in sink but also in source organs.

Indexed as

AsparaginaseAsparagineNitrogenRiceTranslocation

Identifiers

PMID28124210
PMCPMC5267587
OpenAlexW2582749193

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.