Evidence map›Paper›PMID 28123174›Full record

ArticleJournal of human genetics2017

New diagnosis of atypical ataxia-telangiectasia in a 17-year-old boy with T-cell acute lymphoblastic leukemia and a novel ATM mutation.

Jasmin Roohi, Jennifer Crowe, Denis Loredan, Kwame Anyane-Yeboa, Mahesh M Mansukhani, Lenore Omesi, Jennifer Levine, Anya Revah Politi, Shan Zha

Open access · greenAbstract readCase Reports
In one paragraph

Article in Journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 3 pooled it
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 3 syntheses or guidelines pooled it, 14 citations in OpenAlex.

  1. Pooled it
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  3. Pooled it
  4. Article
  5. Review
  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jasmin RoohiClinical Genetics, Kaiser Permanente Mid-Atlantic Medical Group, Formerly Division of Clinical Genetics, Department of Pediatrics, Columbia University Medical Center, Rockville, MD, USA.
Jennifer CroweInstitute for Cancer Genetics, Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Denis LoredanInstitute for Cancer Genetics, Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Kwame Anyane-YeboaDivision of Clinical Genetics, Department of Pediatrics, Columbia University Medical Center, New York, NY, USA.
Mahesh M MansukhaniInstitute for Cancer Genetics, Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Lenore OmesiDivision of Hematology-Oncology and Stem Cell Transplant, Department of Pediatrics, Columbia University Medical Center, New York, NY, USA.
Jennifer LevineDivision of Hematology-Oncology and Stem Cell Transplant, Department of Pediatrics, Columbia University Medical Center, New York, NY, USA.
Anya Revah PolitiInstitute for Genomic Medicine, Columbia University Medical Center, New York, NY, USA.
Shan ZhaInstitute for Cancer Genetics, Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Columbia University Irving Medical Center · USCancer Genetics (United States) · US

Funding

Viral Sequencing CoreU19AI067854 · NIAID · DUKE UNIVERSITY · PI BHARDWAJ, NINA · 2006 to 2011
$290.5M
Virus biology scientific research support componentUM1AI100645 · NIAID · DUKE UNIVERSITY · PI MCMICHAEL, ANDREW JAMES · 2012 to 2018
$204.7M
The Epilepsy Phenome/ Genome Project (EPGP)U01NS053998 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LOWENSTEIN, DANIEL H · 2007 to 2013
$26.4M
An integrated and diverse genomic medicine program for undiagnosed diseasesU01HG007672 · NHGRI · DUKE UNIVERSITY · PI SHASHI, VANDANA · 2014 to 2022
$13.4M
3 of 7 Epi4K: Sequencing, Biostatistics & Bioinformatics CoreU01NS077303 · NINDS · DUKE UNIVERSITY · PI EICHLER, EVAN, GOLDSTEIN, DAVID B. · 2011 to 2018
$13.3M
The role of ATM in the suppression of lymphoid malignancyR01CA158073 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Shan Zha · 2011 to 2026
$5.7M
Whole-genome sequencing for rare highly penetrant gene variants in schizophreniaRC2MH089915 · NIMH · DUKE UNIVERSITY · PI GOLDSTEIN, DAVID B. · 2009 to 2011
$4.6M
2 of 7 EPI4K - Phenotyping Clinical Informatics Core U01NS077276 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LOWENSTEIN, DANIEL H · 2011 to 2015
$3.1M
7 of 7 Epi 4K: Copy Number Variants ProjectU01NS077275 · NINDS · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN, MEFFORD, HEATHER C. · 2011 to 2013
$2.2M
1 of 2: Identification of Rare Variants of OCDR01MH097971 · NIMH · DUKE UNIVERSITY · PI GOLDSTEIN, DAVID B. · 2013 to 2017
$1.9M
DNA-PKCS Phosphorylation in DNA Repair and Chromosomal TranslocationsR01CA184187 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ZHA, SHAN · 2015 to 2019
$1.8M
2/2 - Identification of rare variants of OCDR01MH097993 · NIMH · JOHNS HOPKINS UNIVERSITY · PI NESTADT, GERALD · 2013 to 2017
$1.8M
NCI NIH HHS F31 CA183504NCI NIH HHS R01 CA158073NCI NIH HHS R01 CA184187NHGRI NIH HHS U01 HG007672NIAID NIH HHS R56 AI098588NIAID NIH HHS U19 AI067854NIAID NIH HHS UM1 AI100645NIMH NIH HHS K01 MH098126NIMH NIH HHS R01 MH097971NIMH NIH HHS R01 MH097993NIMH NIH HHS RC2 MH089915NINDS NIH HHS U01 NS053998NINDS NIH HHS U01 NS077274NINDS NIH HHS U01 NS077275NINDS NIH HHS U01 NS077276NINDS NIH HHS U01 NS077303NINDS NIH HHS U01 NS077364NINDS NIH HHS U01 NS077367
6 · The paper itself

Abstract

Ataxia-telangiectasia (A-T) is an autosomal recessive chromosome breakage disorder caused by mutations in the ATM gene. Typically, it presents in early childhood with progressive cerebellar dysfunction along with immunodeficiency and oculocutaneous telangiectasia. An increased risk of malignancy is also associated with the syndrome and, rarely, may be the presenting feature in small children. We describe a 17-year-old boy with slurred speech, mild motor delays and learning disability diagnosed with atypical A-T in the setting of T-cell acute lymphoblastic leukemia. Suspicion for A-T was raised after review of a peripheral blood karyotype demonstrating rearrangements involving chromosomes 7 and/or 14. The diagnosis was confirmed after molecular testing identified a novel homozygous missense variant in ATM (c.5585T>A; p.Leu1862His) that resulted in protein instability and abolished serine/threonine protein kinase activity. To our knowledge, this is the first report of concurrent A-T and lymphoid malignancy diagnoses in an older child or adult with only mild neurological disease. Our experience suggests that screening for the disorder should be considered in any individual with lymphoid malignancy and neurological findings, especially as radiation and certain chemotherapy protocols are contraindicated in A-T.

Indexed as

AdolescentAtaxia TelangiectasiaAtaxia Telangiectasia Mutated ProteinsChildChild, PreschoolHumansInfantMaleMutationPrecursor Cell Lymphoblastic Leukemia-LymphomaAtaxia Telangiectasia Mutated Proteins

Identifiers

PMID28123174
PMCPMC5404952
OpenAlexW2583045035

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.