Evidence map›Paper›PMID 28122976›Full record

ArticleJournal of virology2017

The FACT Complex Promotes Avian Leukosis Virus DNA Integration.

Shelby Winans, Ross C Larue, Carly M Abraham, Nikolozi Shkriabai, Amelie Skopp, Duane Winkler, Mamuka Kvaratskhelia, Karen L Beemon

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Primal FEAR protects against infection.Nature microbiology · 2024
    Article
  4. Article
  5. Review
  6. Structure and function of retroviral integrase.Nature reviews. Microbiology · 2022
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Prototype foamy virus integrase is promiscuous for target choice.Biochemical and biophysical research communications · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Shelby WinansDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, USA.
Ross C LarueCenter for Retrovirus Research and Comprehensive Cancer Center, College of Pharmacy, The Ohio State University, Columbus, Ohio, USA.
Carly M AbrahamCenter for Retrovirus Research and Comprehensive Cancer Center, College of Pharmacy, The Ohio State University, Columbus, Ohio, USA.
Nikolozi ShkriabaiCenter for Retrovirus Research and Comprehensive Cancer Center, College of Pharmacy, The Ohio State University, Columbus, Ohio, USA.
Amelie SkoppDepartment of Biological Sciences, The University of Texas at Dallas, Richardson, Texas, USA.
Duane WinklerDepartment of Biological Sciences, The University of Texas at Dallas, Richardson, Texas, USA.
Mamuka KvaratskheliaCenter for Retrovirus Research and Comprehensive Cancer Center, College of Pharmacy, The Ohio State University, Columbus, Ohio, USA.
Karen L BeemonDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, USA KLB@jhu.edu.
The Ohio State University · USJohns Hopkins University · USThe University of Texas at Dallas · US

Funding

CELLULAR AND MOLECULAR BIOLOGYT32GM007231 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VAN DOREN, MARK B · 1985 to 2020
$18.4M
Structure and function of HIV-1 integraseR01AI062520 · NIAID · UNIVERSITY OF COLORADO DENVER · PI KVARATSKHELIA, MAMUKA · 2006 to 2020
$5.3M
Oncogenes and oncogenic microRNAs in chicken tumorsR01CA124596 · NCI · JOHNS HOPKINS UNIVERSITY · PI BEEMON, KAREN L. · 2008 to 2012
$1.7M
Cellular Factors that regulate avain leukosis virus DNA integrationR21AI128353 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BEEMON, KAREN L. · 2017 to 2018
$437k
NCI NIH HHS R01 CA124596NIAID NIH HHS R01 AI062520NIAID NIH HHS R21 AI128353NIGMS NIH HHS T32 GM007231
6 · The paper itself

Abstract

All retroviruses need to integrate a DNA copy of their genome into the host chromatin. Cellular proteins regulating and targeting lentiviral and gammaretroviral integration in infected cells have been discovered, but the factors that mediate alpharetroviral avian leukosis virus (ALV) integration are unknown. In this study, we have identified the FACT protein complex, which consists of SSRP1 and Spt16, as a principal cellular binding partner of ALV integrase (IN). Biochemical experiments with purified recombinant proteins show that SSRP1 and Spt16 are able to individually bind ALV IN, but only the FACT complex effectively stimulates ALV integration activity

Indexed as

Amino Acid SequenceAnimalsAvian Leukosis VirusCell Cycle ProteinsChick EmbryoConserved SequenceDNA-Binding ProteinsDNA, ViralHEK293 CellsHigh Mobility Group ProteinsHumansIntegrasesProtein BindingProtein Interaction Domains and MotifsTranscriptional Elongation FactorsTranscription FactorsCell Cycle ProteinsDNA-Binding ProteinsDNA, ViralHigh Mobility Group ProteinsIntegrasesSSRP1 protein, humanSUPT16H protein, humanTranscriptional Elongation FactorsTranscription FactorsALVFACTintegration

Identifiers

PMID28122976
PMCPMC5355599
OpenAlexW2581913459

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.