Evidence map›Paper›PMID 28122955›Full record

ArticleThe Journal of cell biology2017

The Vps13p-Cdc31p complex is directly required for TGN late endosome transport and TGN homotypic fusion.

Mithu De, Austin N Oleskie, Mariam Ayyash, Somnath Dutta, Liliya Mancour, Mohamed E Abazeed, Eddy J Brace, Georgios Skiniotis, Robert S Fuller

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 94 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The molecular mechanism of lipid uptake by membrane-anchored bridge-like lipid transfer proteins.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
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  8. Review
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  11. Meiotic Cytokinesis inJournal of fungi (Basel, Switzerland) · 2024
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. A partnership between the lipid scramblase XK and the lipid transfer protein VPS13A at the plasma membrane.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Article
  20. In situ architecture of the lipid transport protein VPS13C at ER-lysosome membrane contacts.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Mithu DeDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.
Austin N OleskieDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.
Mariam AyyashDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.
Somnath DuttaDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.
Liliya MancourDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.
Mohamed E AbazeedDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.ORCID 0000-0002-6614-4440
Eddy J BraceDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.
Georgios SkiniotisDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.
Robert S FullerDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109 bfuller@umich.edu.ORCID 0000-0003-2584-8246
University of Michigan · US

Funding

PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Architectural Basis of Leptin Transmembrane SignalingR01DK090165 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SKINIOTIS, GEORGIOS · 2011 to 2017
$2.3M
GOLGI TARGETING AND RETENTION OF YEAST KEX2 PROTEASER01GM050915 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FULLER, ROBERTA S. · 1994 to 2009
$1.7M
Silicon Mechanics Compute ClusterS10OD020011 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SKINIOTIS, GEORGIOS · 2015 to 2015
$490k
NIDDK NIH HHS R01 DK090165NIGMS NIH HHS R01 GM050915NIGMS NIH HHS T32 GM007544NIH HHS S10 OD020011
6 · The paper itself

Abstract

Yeast VPS13 is the founding member of a eukaryotic gene family of growing interest in cell biology and medicine. Mutations in three of four human VPS13 genes cause autosomal recessive neurodegenerative or neurodevelopmental disease, making yeast Vps13p an important structural and functional model. Using cell-free reconstitution with purified Vps13p, we show that Vps13p is directly required both for transport from the trans-Golgi network (TGN) to the late endosome/prevacuolar compartment (PVC) and for TGN homotypic fusion. Vps13p must be in complex with the small calcium-binding protein Cdc31p to be active. Single-particle electron microscopic analysis of negatively stained Vps13p indicates that this 358-kD protein is folded into a compact rod-shaped density (20 × 4 nm) with a loop structure at one end with a circular opening ∼6 nm in diameter. Vps13p exhibits ATP-stimulated binding to yeast membranes and specific interactions with phosphatidic acid and phosphorylated forms of phosphatidyl inositol at least in part through the binding affinities of conserved N- and C-terminal domains.

Indexed as

Membrane FusionAdenosine TriphosphateCalcium-Binding ProteinsCell Cycle ProteinsEndosomesGenotypeGolgi ApparatusIntracellular MembranesMultiprotein ComplexesMutationPhenotypePhosphatidic AcidsPhosphatidylinositolsPhosphorylationProtein BindingProtein FoldingAdenosine TriphosphateCalcium-Binding ProteinsCDC31 protein, S cerevisiaeCell Cycle ProteinsMultiprotein ComplexesPhosphatidic AcidsPhosphatidylinositolsSaccharomyces cerevisiae ProteinsVPS13 protein, S cerevisiae

Identifiers

PMID28122955
PMCPMC5294781
OpenAlexW2582410297

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.