Evidence map›Paper›PMID 28122331›Full record

ArticleOncotarget2017

Integrative miRNA and mRNA analysis in penile carcinomas reveals markers and pathways with potential clinical impact.

Hellen Kuasne, Mateus C Barros-Filho, Ariane Busso-Lopes, Fábio A Marchi, Maisa Pinheiro, Juan J M Muñoz, Cristovam Scapulatempo-Neto, Eliney F Faria, Gustavo C Guimarães, Ademar Lopes and 4 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it, 46 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Review
  6. Article
  7. Penile cancer: Updates in systemic therapy.Asian journal of urology · 2022
    Review
  8. Review
  9. Immune-based therapies in penile cancer.Nature reviews. Urology · 2022
    Review
  10. Article
  11. Article
  12. Upregulated miRNAs on theFrontiers in genetics · 2022
    Article
  13. Non-Coding RNA in Penile Cancer.Frontiers in oncology · 2022
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Hellen KuasneCIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
Mateus C Barros-FilhoCIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
Ariane Busso-LopesCIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
Fábio A MarchiCIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
Maisa PinheiroCIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
Juan J M MuñozCIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
Cristovam Scapulatempo-NetoDepartment of Pathology, Americas Centro Oncológico Integrado, Rio de Janeiro, Brazil.
Eliney F FariaDepartment of Urology, Barretos Cancer Hospital, Barretos, São Paulo, Brazil.
Gustavo C GuimarãesDepartment of Urology, A. C. Camargo Cancer Center, São Paulo, Brazil.
Ademar LopesDepartment of Urology, A. C. Camargo Cancer Center, São Paulo, Brazil.
José C S Trindade-FilhoDepartment of Urology, Faculty of Medicine, São Paulo State University-UNESP, Botucatu, São Paulo, Brazil.
Maria Aparecida C DominguesDepartment of Pathology, Faculty of Medicine, São Paulo State University-UNESP, Botucatu, São Paulo, Brazil.
Sandra A DrigoDepartment of Urology, Faculty of Medicine, São Paulo State University-UNESP, Botucatu, São Paulo, Brazil.
Silvia R RogattoCIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
AC Camargo Hospital · BRUniversidade Estadual Paulista (Unesp) · BRCentro de Pesquisas Oncológicas · BRHospital de Câncer de Barretos · BRUniversity of Southern Denmark · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Penile carcinoma (PeCa) is an important public health issue in poor and developing countries, and has only recently been explored in terms of genetic and epigenetic studies. Integrative data analysis is a powerful method for the identification of molecular drivers involved in cancer development and progression. miRNA and mRNA expression profiles followed by integrative analysis were investigated in 23 PeCa and 12 non-neoplastic penile tissues (NPT). Expression levels of eight miRNAs and 10 mRNAs were evaluated in the same set of samples used for microarray and in a validation set of cases (PeCa = 36; NPT = 27). Eighty-one miRNAs and 2,697 mRNAs were identified as differentially expressed in PeCa. Integrative data analysis revealed 255 mRNAs potentially regulated by 68 miRNAs. Using RT-qPCR, eight miRNAs and nine transcripts were confirmed as altered in PeCa. We identified that MMP1, MMP12 and PPARG and hsa-miR-31-5p, hsa-miR-224-5p, and hsa-miR-223-3p were able to distinguish tumors from NPT with high sensitivity and specificity. Higher MMP1 expression was detected as a better predictor of lymph node metastasis than the clinical-pathological data. In addition, PPARG and EGFR were highlighted as potential pathways for targeted therapy in PeCa. The analysis based on HPV positivity (7 of 23 cases) revealed five miRNA and 13 mRNA differentially expressed. Although in a limited number of cases, HPV positive PeCa presented less aggressive phenotype in comparison with negative cases. Overall, an integrative analysis using mRNA and miRNA profiles revealed markers related with tumor development and progression. Furthermore, MMP1 expression level was a predictive marker for lymph node metastasis in patients with PeCa.

Indexed as

Gene Expression Regulation, NeoplasticAdultAgedAged, 80 and overBiomarkers, TumorCluster AnalysisDiagnosis, DifferentialGene Expression ProfilingHumansMaleMatrix Metalloproteinase 1Matrix Metalloproteinase 12MicroRNAsMiddle AgedPenile NeoplasmsPPAR gammaBiomarkers, TumorMatrix Metalloproteinase 1Matrix Metalloproteinase 12MicroRNAsMIR223, humanMIRN224 microRNA, humanMIRN31 microRNA, humanPPAR gammaRNA, MessengerHPV infectionintegrative analysislymph node metastasismicro-RNApenile carcinoma

Identifiers

PMID28122331
PMCPMC5362487
OpenAlexW2581475848

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.