Evidence map›Paper›PMID 28120935›Full record

ArticleScientific reports2017

Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.).

Kazuki Mori, Kenta Shirasawa, Hitoshi Nogata, Chiharu Hirata, Kosuke Tashiro, Tsuyoshi Habu, Sangwan Kim, Shuichi Himeno, Satoru Kuhara, Hidetoshi Ikegami

Erratum issuedAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Article
  2. Transcriptomic analysis of three fig (Frontiers in plant science · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. The transcription factor FcMYB3 responds toFrontiers in plant science · 2024
    Article
  9. Review
  10. Article
  11. Article
  12. Advancing understanding ofFrontiers in plant science · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Kazuki MoriFaculty of Agriculture, Kyushu University, Fukuoka, Japan.
Kenta ShirasawaKazusa DNA Research Institute, Kisarazu, Chiba, Japan.
Hitoshi NogataFukuoka Agriculture and Forestry Research Center Buzen Branch, Yukuhashi, Fukuoka, Japan.
Chiharu HirataFukuoka Agriculture and Forestry Research Center, Fukuoka, Japan.
Kosuke TashiroFaculty of Agriculture, Kyushu University, Fukuoka, Japan.
Tsuyoshi HabuGraduate School of Agriculture, Ehime University, Ehime, Japan.
Sangwan KimFaculty of Agriculture, Kyushu University, Fukuoka, Japan.
Shuichi HimenoFukuoka Agriculture and Forestry Research Center Buzen Branch, Yukuhashi, Fukuoka, Japan.
Satoru KuharaFaculty of Agriculture, Kyushu University, Fukuoka, Japan.
Hidetoshi IkegamiFukuoka Agriculture and Forestry Research Center Buzen Branch, Yukuhashi, Fukuoka, Japan. ikegami@farc.pref.fukuoka.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

With the aim of identifying sex determinants of fig, we generated the first draft genome sequence of fig and conducted the subsequent analyses. Linkage analysis with a high-density genetic map established by a restriction-site associated sequencing technique, and genome-wide association study followed by whole-genome resequencing analysis identified two missense mutations in RESPONSIVE-TO-ANTAGONIST1 (RAN1) orthologue encoding copper-transporting ATPase completely associated with sex phenotypes of investigated figs. This result suggests that RAN1 is a possible sex determinant candidate in the fig genome. The genomic resources and genetic findings obtained in this study can contribute to general understanding of Ficus species and provide an insight into fig's and plant's sex determination system.

Indexed as

Whole Genome SequencingCation Transport ProteinsFicusGenome-Wide Association StudyMutant ProteinsMutation, MissensePhenotypePlant ProteinsCation Transport ProteinsMutant ProteinsPlant Proteins

Identifiers

PMID28120935
PMCPMC5264649

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.