Evidence map›Paper›PMID 28119721›Full record

ArticleFrontiers in plant science2016

The Interplay of Chromatin Landscape and DNA-Binding Context Suggests Distinct Modes of EIN3 Regulation in

Elena V Zemlyanskaya, Victor G Levitsky, Dmitry Y Oshchepkov, Ivo Grosse, Victoria V Mironova

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Elena V ZemlyanskayaInstitute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences (SB RAS), NovosibirskRussia; Department of Natural Sciences, Novosibirsk State UniversityNovosibirsk, Russia.
Victor G LevitskyInstitute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences (SB RAS), NovosibirskRussia; Department of Natural Sciences, Novosibirsk State UniversityNovosibirsk, Russia.
Dmitry Y OshchepkovInstitute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences (SB RAS), Novosibirsk Russia.
Ivo GrosseDepartment of Natural Sciences, Novosibirsk State UniversityNovosibirsk, Russia; Institute of Computer Science, Martin Luther University Halle-WittenbergHalle(Saale), Germany; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-LeipzigLeipzig, Germany.
Victoria V MironovaInstitute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences (SB RAS), NovosibirskRussia; Department of Natural Sciences, Novosibirsk State UniversityNovosibirsk, Russia.
Novosibirsk State University · RUInstitute of Cytology and Genetics · RUSiberian Branch of the Russian Academy of Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant hormone ethylene regulates numerous developmental processes and stress responses. Ethylene signaling proceeds via a linear pathway, which activates transcription factor (TF) EIN3, a primary transcriptional regulator of ethylene response. EIN3 influences gene expression upon binding to a specific sequence in gene promoters. This interaction, however, might be considerably affected by additional co-factors. In this work, we perform whole genome bioinformatics study to identify the impact of epigenetic factors in EIN3 functioning. The analysis of publicly available ChIP-Seq data on EIN3 binding in

Indexed as

bioinformaticsChIP-SeqEIN3 binding site (EBS)ETHYLENE-INSENSITIVE3Gene Ontologyposition weight matrixTEILtranscriptional regulation

Identifiers

PMID28119721
PMCPMC5220190
OpenAlexW2586126358

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.