Evidence map›Paper›PMID 28119720›Full record

ArticleFrontiers in plant science2016

Quantitative iTRAQ Proteomics Revealed Possible Roles for Antioxidant Proteins in Sorghum Aluminum Tolerance.

Dangwei Zhou, Yong Yang, Jinbiao Zhang, Fei Jiang, Eric Craft, Theodore W Thannhauser, Leon V Kochian, Jiping Liu

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
10.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 45 citations in OpenAlex.

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  8. Illumina sequencing revealed roles of microRNAs in different aluminum tolerance of two citrus species.Physiology and molecular biology of plants : an international journal of functional plant biology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Dangwei ZhouRobert W. Holley Center for Agriculture and Health, United States Department of Agriculture - Agricultural Research Service, Cornell UniversityIthaca, NY, USA; Center of Plateau Ecology, Northwest Institute of Plateau Biology, Chinese Academy of SciencesXining, China.
Yong YangRobert W. Holley Center for Agriculture and Health, United States Department of Agriculture - Agricultural Research Service, Cornell University Ithaca, NY, USA.
Jinbiao ZhangRobert W. Holley Center for Agriculture and Health, United States Department of Agriculture - Agricultural Research Service, Cornell UniversityIthaca, NY, USA; College of Life Sciences, Fujian Agriculture and Forestry UniversityFuzhou, China.
Fei JiangRobert W. Holley Center for Agriculture and Health, United States Department of Agriculture - Agricultural Research Service, Cornell UniversityIthaca, NY, USA; Agricultural Biotechnology Center, Chengdu Institute of Biology, Chinese Academy of SciencesChengdu, China.
Eric CraftRobert W. Holley Center for Agriculture and Health, United States Department of Agriculture - Agricultural Research Service, Cornell University Ithaca, NY, USA.
Theodore W ThannhauserRobert W. Holley Center for Agriculture and Health, United States Department of Agriculture - Agricultural Research Service, Cornell University Ithaca, NY, USA.
Leon V KochianRobert W. Holley Center for Agriculture and Health, United States Department of Agriculture - Agricultural Research Service, Cornell University Ithaca, NY, USA.
Jiping LiuRobert W. Holley Center for Agriculture and Health, United States Department of Agriculture - Agricultural Research Service, Cornell University Ithaca, NY, USA.
Cornell University · USUnited States Department of Agriculture · USFujian Agriculture and Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aluminum (Al) toxicity inhibits root growth and limits crop yields on acid soils worldwide. However, quantitative information is scarce on protein expression profiles under Al stress in crops. In this study, we report on the identification of potential Al responsive proteins from root tips of Al sensitive BR007 and Al tolerant SC566 sorghum lines using a strategy employing iTRAQ and 2D-liquid chromatography (LC) coupled to MS/MS (2D-LC-MS/MS). A total of 771 and 329 unique proteins with abundance changes of >1.5 or <0.67-fold were identified in BR007 and SC566, respectively. Protein interaction and pathway analyses indicated that proteins involved in the antioxidant system were more abundant in the tolerant line than in the sensitive one after Al treatment, while opposite trends were observed for proteins involved in lignin biosynthesis. Higher levels of ROS accumulation in root tips of the sensitive line due to decreased activity of antioxidant enzymes could lead to higher lignin production and hyper-accumulation of toxic Al in cell walls. These results indicated that activities of peroxidases and the balance between production and consumption of ROS could be important for Al tolerance and lignin biosynthesis in sorghum.

Indexed as

aluminum toleranceantioxidant systemlignin biosynthesisproteomicssorghum

Identifiers

PMID28119720
PMCPMC5220100
OpenAlexW2569672542

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.