Evidence map›Paper›PMID 28118661›Full record

ArticleInvestigative ophthalmology & visual science2017

Trinucleotide Repeat Expansion in the Transcription Factor 4 (TCF4) Gene Leads to Widespread mRNA Splicing Changes in Fuchs' Endothelial Corneal Dystrophy.

Eric D Wieben, Ross A Aleff, Xiaojia Tang, Malinda L Butz, Krishna R Kalari, Edward W Highsmith, Jin Jen, George Vasmatzis, Sanjay V Patel, Leo J Maguire and 2 more

Open access · goldAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 2 pooled it
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 2 syntheses or guidelines pooled it, 85 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  14. Article
  15. Article
  16. AAGGG repeat expansions triggerScience advances · 2024
    Article
  17. Review
  18. Article
  19. Squishy matters - Corneal mechanobiology in health and disease.Progress in retinal and eye research · 2024
    Review
  20. Targeting the ExpandedACS omega · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Eric D WiebenDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, United States.
Ross A AleffDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, United States.
Xiaojia TangDivision of Biostatistics and Bioinformatics and Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States.
Malinda L ButzDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota, United States.
Krishna R KalariDivision of Biostatistics and Bioinformatics and Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States.
Edward W HighsmithDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota, United States.
Jin JenDepartment of Experimental Pathology and Laboratory Medicine, Mayo Clinic, Rochester, Minnesota, United States.
George VasmatzisDepartment of Molecular Medicine, Mayo Clinic, Rochester, Minnesota, United States.
Sanjay V PatelDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United States.
Leo J MaguireDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United States.
Keith H BaratzDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United States.
Michael P FautschDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United States.
Mayo Clinic · US

Funding

Pathogenesis of age-related Fuchs Endothelial Corneal DystrophyR01EY026490 · NEI · MAYO CLINIC ROCHESTER · PI FAUTSCH, MICHAEL P., GOTTESFELD, JOEL M. · 2016 to 2019
$2.0M
The role of transcription factor 4 repeat expansion in Fuchs endothelial corneal dystrophyR21EY025071 · NEI · MAYO CLINIC ROCHESTER · PI BARATZ, KEITH H, WIEBEN, ERIC D · 2015 to 2016
$451k
NEI NIH HHS R01 EY026490NEI NIH HHS R21 EY025071
6 · The paper itself

Abstract

Purpose: To identify RNA missplicing events in human corneal endothelial tissue isolated from Fuchs' endothelial corneal dystrophy (FECD). Methods: Total RNA was isolated and sequenced from corneal endothelial tissue obtained during keratoplasty from 12 patients with FECD and 4 patients undergoing keratoplasty or enucleation for other indications. The length of the trinucleotide repeat (TNR) CTG in the transcription factor 4 (TCF4) gene was determined using leukocyte-derived DNA analyzed by a combination of Southern blotting and Genescan analysis. Commercial statistical software was used to quantify expression of alternatively spliced genes. Validation of selected alternative splicing events was performed by using RT-PCR. Gene sets identified were analyzed for overrepresentation using Web-based analysis system. Results: Corneal endothelial tissue from FECD patients containing a CTG TNR expansion sequence in the TCF4 gene revealed widespread changes in mRNA splicing, including a novel splicing event involving FGFR2. Differential splicing of NUMA1, PPFIBP1, MBNL1, and MBNL2 transcripts were identified in all FECD samples containing a TNR expansion. The differentially spliced genes were enriched for products that localize to the cell cortex and bind cytoskeletal and cell adhesion proteins. Conclusions: Corneal endothelium from FECD patients harbors a unique signature of mis-splicing events due to CTG TNR expansion in the TCF4 gene, consistent with the hypothesis that RNA toxicity contributes to the pathogenesis of FECD. Changes to the endothelial barrier function, a known event in the development of FECD, was identified as a key biological process influenced by the missplicing events.

Indexed as

Gene Expression RegulationGenetic Predisposition to DiseaseAdultAgedAged, 80 and overAllelesBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBlotting, SouthernEndothelium, CornealFemaleFuchs' Endothelial DystrophyGenotypeHumansMaleMiddle AgedPolymerase Chain ReactionBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsRNA, MessengerTCF4 protein, humanTranscription Factor 4Transcription Factors

Identifiers

PMID28118661
PMCPMC5270622
OpenAlexW2582255770

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.