Evidence map›Paper›PMID 28118386›Full record

ArticlePloS one2017

Biofilm Formation by Clostridium ljungdahlii Is Induced by Sodium Chloride Stress: Experimental Evaluation and Transcriptome Analysis.

Jo Philips, Korneel Rabaey, Derek R Lovley, Madeline Vargas

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Microbial electrosynthesis of acetate from COEnvironmental science and ecotechnology · 2023
    Article
  12. Article
  13. Article
  14. Understanding the transcriptomic response ofFrontiers in microbiology · 2023
    Article
  15. Article
  16. Formation of Biofilm byFrontiers in microbiology · 2022
    Article
  17. Article
  18. Article
  19. TheMicrobiology spectrum · 2021
    Article
  20. Reactor Designs and Configurations for Biological and Bioelectrochemical C1 Gas Conversion: A Review.International journal of environmental research and public health · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Jo PhilipsCenter of Microbial Ecology and Technology (CMET), Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0003-0471-7802
Korneel RabaeyCenter of Microbial Ecology and Technology (CMET), Ghent University, Ghent, Belgium.
Derek R LovleyDepartment of Microbiology, University of Massachusetts, Amherst, Massachusetts, United States of America.
Madeline VargasDepartment of Biology, College of the Holy Cross, Worcester, Massachusetts, United States of America.
University of Massachusetts Amherst · USCollege of the Holy Cross · USGhent University · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The acetogen Clostridium ljungdahlii is capable of syngas fermentation and microbial electrosynthesis. Biofilm formation could benefit both these applications, but was not yet reported for C. ljungdahlii. Biofilm formation does not occur under standard growth conditions, but attachment or aggregation could be induced by different stresses. The strongest biofilm formation was observed with the addition of sodium chloride. After 3 days of incubation, the biomass volume attached to a plastic surface was 20 times higher with than without the addition of 200 mM NaCl to the medium. The addition of NaCl also resulted in biofilm formation on glass, graphite and glassy carbon, the latter two being often used electrode materials for microbial electrosynthesis. Biofilms were composed of extracellular proteins, polysaccharides, as well as DNA, while pilus-like appendages were observed with, but not without, the addition of NaCl. A transcriptome analysis comparing planktonic (no NaCl) and biofilm (NaCl addition) cells showed that C. ljungdahlii coped with the salt stress by the upregulation of the general stress response, Na+ export and osmoprotectant accumulation. A potential role for poly-N-acetylglucosamines and D-alanine in biofilm formation was found. Flagellar motility was downregulated, while putative type IV pili biosynthesis genes were not expressed. Moreover, the gene expression analysis suggested the involvement of the transcriptional regulators LexA, Spo0A and CcpA in stress response and biofilm formation. This study showed that NaCl addition might be a valuable strategy to induce biofilm formation by C. ljungdahlii, which can improve the efficacy of syngas fermentation and microbial electrosynthesis applications.

Indexed as

BiofilmsBiomassCarbonClostridiumCulture MediaCulture TechniquesFimbriae, BacterialFlagellaGene Expression ProfilingGene Expression Regulation, BacterialGlassGraphiteOsmotic PressureRNA, BacterialRNA, RibosomalSodium ChlorideCarbonCulture MediaGraphiteRNA, BacterialRNA, RibosomalSodium Chloride

Identifiers

PMID28118386
PMCPMC5261816
OpenAlexW2583023521

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.