Evidence map›Paper›PMID 28117766›Full record

ArticleJournal of visualized experiments : JoVE2017

Combining Wet and Dry Lab Techniques to Guide the Crystallization of Large Coiled-coil Containing Proteins.

Jenna K Zalewski, Simone Heber, Joshua H Mo, Keith O'Conor, Jeffrey D Hildebrand, Andrew P VanDemark

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jenna K ZalewskiDepartment of Biological Sciences, University of Pittsburgh.
Simone HeberDepartment of Biological Sciences, University of Pittsburgh; Institute of Structural Biology, German Research Center for Environmental Health.
Joshua H MoDepartment of Biological Sciences, University of Pittsburgh.
Keith O'ConorDepartment of Biological Sciences, University of Pittsburgh.
Jeffrey D HildebrandDepartment of Biological Sciences, University of Pittsburgh.
Andrew P VanDemarkDepartment of Biological Sciences, University of Pittsburgh; andyv@pitt.edu.

Funding

The Structural Basis of Shroom-Mediated Cell ContractilityR01GM097204 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VANDEMARK, ANDREW PAUL · 2011 to 2015
$1.4M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM097204
6 · The paper itself

Abstract

Obtaining crystals for structure determination can be a difficult and time consuming proposition for any protein. Coiled-coil proteins and domains are found throughout nature, however, because of their physical properties and tendency to aggregate, they are traditionally viewed as being especially difficult to crystallize. Here, we utilize a variety of quick and simple techniques designed to identify a series of possible domain boundaries for a given coiled-coil protein, and then quickly characterize the behavior of these proteins in solution. With the addition of a strongly fluorescent tag (mRuby2), protein characterization is simple and straightforward. The target protein can be readily visualized under normal lighting and can be quantified with the use of an appropriate imager. The goal is to quickly identify candidates that can be removed from the crystallization pipeline because they are unlikely to succeed, affording more time for the best candidates and fewer funds expended on proteins that do not produce crystals. This process can be iterated to incorporate information gained from initial screening efforts, can be adapted for high-throughput expression and purification procedures, and is augmented by robotic screening for crystallization.

Indexed as

Amino Acid SequenceComputational BiologyCrystallizationHumansMembrane ProteinsPlasmidsPoint MutationProtein DomainsProteinsRecombinant Fusion ProteinsSequence AlignmentUser-Computer InterfaceMembrane ProteinsProteinsRecombinant Fusion ProteinsSHROOM2 protein, human

Identifiers

PMID28117766
PMCPMC5409187

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.