Evidence map›Paper›PMID 28117406›Full record

ArticleScientific reports2017

Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic strains.

Claire Pancrace, Marie-Anne Barny, Reiko Ueoka, Alexandra Calteau, Thibault Scalvenzi, Jacques Pédron, Valérie Barbe, Joern Piel, Jean-François Humbert, Muriel Gugger

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Frontiers in microbiology · 2026
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  6. HABS-BLOCKS© InhibitedMicroorganisms · 2025
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  8. Polyphasic Approach and Potential Cyanotoxin Production byInternational journal of microbiology · 2024
    Article
  9. Article
  10. Review
  11. Review
  12. International journal of environmental research and public health · 2022
    Article
  13. Article
  14. Article
  15. Effects of submerged macrophytes (Frontiers in microbiology · 2022
    Article
  16. Article
  17. Review
  18. Isolation and Characterization ofApplied and environmental microbiology · 2021
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Claire PancraceInstitut Pasteur, Collection des Cyanobactéries, 28 rue du Dr Roux, 75724 Paris Cedex 05, France.
Marie-Anne BarnyUMR UPMC 113, CNRS 7618, IRD 242, INRA 1392, PARIS 7 113, UPEC, IEES Paris, 4 Place Jussieu, 75005, Paris, France.
Reiko UeokaInstitute of Microbiology, Eigenössische Technische Hochschule (ETH) Zurich, Vladimir-Prelog-Weg 4, 8093 Zurich, Switzerland.
Alexandra CalteauCommissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Genoscope &CNRS, UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, 2, rue Gaston Crémieux, CP 5706, 91057 EVRY cedex, France.
Thibault ScalvenziInstitut Pasteur, Collection des Cyanobactéries, 28 rue du Dr Roux, 75724 Paris Cedex 05, France.
Jacques PédronUMR UPMC 113, CNRS 7618, IRD 242, INRA 1392, PARIS 7 113, UPEC, IEES Paris, 4 Place Jussieu, 75005, Paris, France.
Valérie BarbeCommissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Genoscope, Laboratoire de Biologie Moléculaire pour l'étude des Génomes, 2, rue Gaston Crémieux, CP 5706, 91057 EVRY cedex, France.
Joern PielInstitute of Microbiology, Eigenössische Technische Hochschule (ETH) Zurich, Vladimir-Prelog-Weg 4, 8093 Zurich, Switzerland.
Jean-François HumbertUMR UPMC 113, CNRS 7618, IRD 242, INRA 1392, PARIS 7 113, UPEC, IEES Paris, 4 Place Jussieu, 75005, Paris, France.
Muriel GuggerInstitut Pasteur, Collection des Cyanobactéries, 28 rue du Dr Roux, 75724 Paris Cedex 05, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Planktothrix is a dominant cyanobacterial genus forming toxic blooms in temperate freshwater ecosystems. We sequenced the genome of planktic and non planktic Planktothrix strains to better represent this genus diversity and life style at the genomic level. Benthic and biphasic strains are rooting the Planktothrix phylogenetic tree and widely expand the pangenome of this genus. We further investigated in silico the genetic potential dedicated to gas vesicles production, nitrogen fixation as well as natural product synthesis and conducted complementary experimental tests by cell culture, microscopy and mass spectrometry. Significant differences for the investigated features could be evidenced between strains of different life styles. The benthic Planktothrix strains showed unexpected characteristics such as buoyancy, nitrogen fixation capacity and unique natural product features. In comparison with Microcystis, another dominant toxic bloom-forming genus in freshwater ecosystem, different evolutionary strategies were highlighted notably as Planktothrix exhibits an overall greater genetic diversity but a smaller genomic plasticity than Microcystis. Our results are shedding light on Planktothrix evolution, phylogeny and physiology in the frame of their diverse life styles.

Indexed as

Genetic VariationGenomeGenome, BacterialGenomicsOscillatoriaPhylogeny

Identifiers

PMID28117406
PMCPMC5259702

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.