Evidence map›Paper›PMID 28117402›Full record

ArticleScientific reports2017

Whole-exome sequencing of 228 patients with sporadic Parkinson's disease.

Cynthia Sandor, Frantisek Honti, Wilfried Haerty, Konrad Szewczyk-Krolikowski, Paul Tomlinson, Sam Evetts, Stephanie Millin, Thomas Keane, Shane A McCarthy, Richard Durbin and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
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  7. Review
  8. Inorganic Polyphosphate, Mitochondria, and Neurodegeneration.Progress in molecular and subcellular biology · 2022
    Article
  9. Article
  10. Article
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  15. Review
  16. Article
  17. Utility and implications of exome sequencing in early-onset Parkinson's disease.Movement disorders : official journal of the Movement Disorder Society · 2019
    Article
  18. Disease markers · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Cynthia SandorOxford Parkinson's Disease Centre, University of Oxford, Oxford, United Kingdom.
Frantisek HontiMRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, OX1 3PT, United Kingdom.
Wilfried HaertyMRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, OX1 3PT, United Kingdom.
Konrad Szewczyk-KrolikowskiOxford Parkinson's Disease Centre, University of Oxford, Oxford, United Kingdom.
Paul TomlinsonOxford Parkinson's Disease Centre, University of Oxford, Oxford, United Kingdom.
Sam EvettsOxford Parkinson's Disease Centre, University of Oxford, Oxford, United Kingdom.
Stephanie MillinOxford Parkinson's Disease Centre, University of Oxford, Oxford, United Kingdom.
Thomas KeaneWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Shane A McCarthyWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Richard DurbinWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Kevin TalbotOxford Parkinson's Disease Centre, University of Oxford, Oxford, United Kingdom.
Michele HuOxford Parkinson's Disease Centre, University of Oxford, Oxford, United Kingdom.
Caleb WebberOxford Parkinson's Disease Centre, University of Oxford, Oxford, United Kingdom.
Chris P PontingOxford Parkinson's Disease Centre, University of Oxford, Oxford, United Kingdom.
Richard Wade-MartinsOxford Parkinson's Disease Centre, University of Oxford, Oxford, United Kingdom.
University of Oxford · GBJohn Radcliffe Hospital · GBWellcome Sanger Institute · GB

Funding

Medical Research Council MC_EX_MR/N50192X/1Medical Research Council MC_PC_16034Medical Research Council MC_UP_A320_1004Medical Research Council MC_UU_12008/1Medical Research Council MC_UU_12021/1Medical Research Council MC_UU_12021/4Medical Research Council MR/L023784/1Medical Research Council MR/M024962/1Parkinson's UK J-0901
6 · The paper itself

Abstract

Parkinson's disease (PD) is the most common neurodegenerative movement disorder, affecting 1% of the population over 65 years characterized clinically by both motor and non-motor symptoms accompanied by the preferential loss of dopamine neurons in the substantia nigra pars compacta. Here, we sequenced the exomes of 244 Parkinson's patients selected from the Oxford Parkinson's Disease Centre Discovery Cohort and, after quality control, 228 exomes were available for analyses. The PD patient exomes were compared to 884 control exomes selected from the UK10K datasets. No single non-synonymous (NS) single nucleotide variant (SNV) nor any gene carrying a higher burden of NS SNVs was significantly associated with PD status after multiple-testing correction. However, significant enrichments of genes whose proteins have roles in the extracellular matrix were amongst the top 300 genes with the most significantly associated NS SNVs, while regions associated with PD by a recent Genome Wide Association (GWA) study were enriched in genes containing PD-associated NS SNVs. By examining genes within GWA regions possessing rare PD-associated SNVs, we identified RAD51B. The protein-product of RAD51B interacts with that of its paralogue RAD51, which is associated with congenital mirror movements phenotypes, a phenotype also comorbid with PD.

Indexed as

ExomeAdultAgedAged, 80 and overDNA-Binding ProteinsExome SequencingFemaleGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyHumansMaleMiddle AgedParkinson DiseaseDNA-Binding ProteinsRAD51B protein, human

Identifiers

PMID28117402
PMCPMC5259721
OpenAlexW2581428820

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.