Evidence map›Paper›PMID 28117392›Full record

ArticleScientific reports2017

Safety assessment of Staphylococcus phages of the family Myoviridae based on complete genome sequences.

Zelin Cui, Xiaokui Guo, Ke Dong, Yan Zhang, Qingtian Li, Yongzhang Zhu, Lingbing Zeng, Rong Tang, Li Li

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 62 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Combination Treatment for Inhibition of the Growth ofAntibiotics (Basel, Switzerland) · 2022
    Article
  10. Article
  11. Article
  12. εPharmaceuticals (Basel, Switzerland) · 2021
    Article
  13. JD419, aFrontiers in microbiology · 2021
    Article
  14. Article
  15. Article
  16. VirulentFrontiers in microbiology · 2021
    Article
  17. Antibiotic Resistance: One Health One World Outlook.Frontiers in cellular and infection microbiology · 2021
    Review
  18. AViruses · 2020
    Article
  19. BioprospectingViruses · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Zelin CuiDepartment of Laboratory Medicine, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200080, China.
Xiaokui GuoDepartment of Immunology and Microbiology, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200025, China.
Ke DongDepartment of Immunology and Microbiology, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200025, China.
Yan ZhangDepartment of Immunology and Microbiology, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200025, China.
Qingtian LiDepartment of Laboratory Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200025, China.
Yongzhang ZhuDepartment of Immunology and Microbiology, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200025, China.
Lingbing ZengDepartment of Immunology and Microbiology, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200025, China.
Rong TangDepartment of Laboratory Medicine, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200080, China.
Li LiDepartment of Laboratory Medicine, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200080, China.
Shanghai Jiao Tong University · CNShanghai First People's Hospital · CNRuijin Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Staphylococcus phages of the Myoviridae family have a wide host range and potential applications in phage therapy. In this report, safety assessments of these phages were conducted based on their complete genome sequences. The complete genomes of Staphylococcus phages of the Myoviridae family were analyzed, and the Open Reading Frame (ORFs) were compared with a pool of virulence and antibiotic resistance genes using the BLAST algorithm. In addition, the lifestyle of the phages (virulent or temperate) was also confirmed using PHACTS. The results showed that all phages were lytic and did not contain resistance or virulence genes based on bioinformatic analyses, excluding the possibility that they could be vectors for the dissemination of these undesirable genes. These findings suggest that the phages are safe at the genome level. The SceD-like transglycosylase, which is a biomarker for vancomycin-intermediate strains, was widely distributed in the phage genomes. Approximately 70% of the ORFs encoded in the phage genomes have unknown functions; therefore, their roles in the antibiotic resistance and virulence of Staphylococcus aureus are still unknown and require consideration before use in phage therapy.

Indexed as

Genome, ViralBase SequenceCluster AnalysisMyoviridaeOpen Reading FramesPhylogenyStaphylococcus PhagesVirulence

Identifiers

PMID28117392
PMCPMC5259776
OpenAlexW2582496657

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.