Evidence map›Paper›PMID 28115545›Full record

ArticleJournal of bacteriology2017

Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12.

Garrett T Wong, Richard P Bonocora, Alicia N Schep, Suzannah M Beeler, Anna J Lee Fong, Lauren M Shull, Lakshmi E Batachari, Moira Dillon, Ciaran Evans, Carla J Becker and 4 more

Abstract read
In one paragraph

Article in Journal of bacteriology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed.

  1. Article
  2. Article
  3. OmpK36 GD insertion induces RpoS-dependentAntimicrobial agents and chemotherapy · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. RpoS and the bacterial general stress response.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  17. Article
  18. Article
  19. Review
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Garrett T WongDepartment of Biology, Harvey Mudd College, Claremont, California, USA.
Richard P BonocoraWadsworth Center, New York State Department of Health, Albany, New York, USA.
Alicia N SchepDepartment of Biology, Harvey Mudd College, Claremont, California, USA.
Suzannah M BeelerDepartment of Biology, Harvey Mudd College, Claremont, California, USA.
Anna J Lee FongDepartment of Biology, Harvey Mudd College, Claremont, California, USA.
Lauren M ShullDepartment of Biology, Harvey Mudd College, Claremont, California, USA.
Lakshmi E BatachariDepartment of Biology, Harvey Mudd College, Claremont, California, USA.
Moira DillonDepartment of Biology, Harvey Mudd College, Claremont, California, USA.
Ciaran EvansDepartment of Mathematics, Pomona College, Claremont, California, USA.
Carla J BeckerDepartment of Biology, Harvey Mudd College, Claremont, California, USA.
Eliot C BushDepartment of Biology, Harvey Mudd College, Claremont, California, USA.
Johanna HardinDepartment of Mathematics, Pomona College, Claremont, California, USA.
Joseph T WadeWadsworth Center, New York State Department of Health, Albany, New York, USA joseph.wade@health.ny.gov stoebel@g.hmc.edu.
Daniel M StoebelDepartment of Biology, Harvey Mudd College, Claremont, California, USA joseph.wade@health.ny.gov stoebel@g.hmc.edu.ORCID http://orcid.org/0000-0002-9461-7567

Funding

Pervasive transcription in bacterial genomesDP2OD007188 · OD · WADSWORTH CENTER · PI WADE, JOSEPH THOMAS · 2010 to 2010
$2.4M
Howard Hughes Medical Institute 52007544NIH HHS DP2 OD007188
6 · The paper itself

Abstract

The alternative sigma factor RpoS is a central regulator of many stress responses in

Indexed as

Genome-Wide Association StudyBacterial ProteinsBlotting, WesternEscherichia coli K12Gene Expression Regulation, BacterialMutationPromoter Regions, GeneticSigma FactorTranscriptomeBacterial ProteinsSigma Factorsigma factor KatF protein, BacteriapromotersRpoSstress responsetranscriptional regulationtranscriptomeσS

Identifiers

PMID28115545
PMCPMC5350281

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.